MmuALTD0015182-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000044308 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:MGI Symbol;Acc:MGI:1861100]
Coordinates
chr2:69829482-69831869:+
Coord C1 exon
chr2:69829482-69829682
Coord A exon
NA
Coord C2 exon
chr2:69831733-69831869
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGC
5' ss Score
5.34
3' ss Seq
TATGTTCACTTTTTTTATAGTCA
3' ss Score
7.15
Exon sequences
Seq C1 exon
AATGACCAGGTTCTTCAGGGCTTCTCAGTGGACAAAGGAGAATTCACGTGTCCCCTCTGTAGACAGTTTGCCAACAGTGTTCTTCCATGTTATCCTGGAAGCAATGTGGAAAATAACCTTTGGCAACGCCCTTGTAACAAAAGCACGCAAGATCTCATAAAGGAAGTGGAAGAGCTGCAGGGACGGCCGGGAGCTTTCCCA
Seq A exon
NA
Seq C2 exon
TCAGAAACCAACTTAAGTAAAGAAATGGAATCTGTAATGAAAGATATAAAAAATACCACTCAGAAGAAATACAGAGACTATAGCAAGACCCCAGGCTCACCAGACAACGAGTTTCTCTTTATGTACTCTGTTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044308-36-38,37-38-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.363
Domain overlap (PFAM):
C1:
PF136391=zf-RING_2=PD(35.7=29.9),PF0062824=PHD=PD(46.8=32.8),PF0080420=Syntaxin=PU(44.0=32.8)
A:
NA
C2:
PF0080420=Syntaxin=PD(52.0=56.5)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGGAAGAGCTGCAGGGA
R:
GTCTCTGTATTTCTTCTGAGTGGT
Band lengths:
116-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: