HsaALTD0007003-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:170006990-170008940:+
Coord C1 exon
chr2:170006990-170007190
Coord A exon
NA
Coord C2 exon
chr2:170008804-170008940
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGC
5' ss Score
5.34
3' ss Seq
ATGTTTGCATTTTTTTATAGTCA
3' ss Score
7.09
Exon sequences
Seq C1 exon
AATGACCAGGTTCTTCAGGGCTTCTCGGTGGACAAAGGAGAATTCACGTGTCCACTCTGTAGGCAGTTTGCTAACAGTGTTCTTCCATGTTATCCTGGAAGCAATGTGGAAAATAACCCTTGGCAACGTCCTAGCAACAAAAGCATACAAGATCTCATAAAGGAAGTGGAGGAGCTGCAGGGACGACCGGGAGCTTTCCCA
Seq A exon
NA
Seq C2 exon
TCAGAAACAAATTTAAGTAAAGAAATGGAATCTGTAATGAAAGATATAAAAAATACCACTCAGAAGAAATATAGAGACTATAGCAAGACCCCGGGCTCACCAGACAATGATTTTCTCTTTATGTACTCTGTTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357-71-71,72-71-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=NA C2=0.387
Domain overlap (PFAM):
C1:
PF136391=zf-RING_2=PD(35.1=29.9)
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGACCGGGAGCTTTCCC
R:
CCCGGGGTCTTGCTATAGTCT
Band lengths:
115-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development