DreALTD0021607-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000042508 | ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1473]
Coordinates
chr9:3956798-3960780:-
Coord C1 exon
chr9:3960580-3960780
Coord A exon
NA
Coord C2 exon
chr9:3956798-3956934
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGA
5' ss Score
5.9
3' ss Seq
GTTATTTTCCCTCTTCCCAGATC
3' ss Score
9.83
Exon sequences
Seq C1 exon
AATGATCAGGTTCTTCAGGGGATTTCTGTGGATAAAGGCGAGTTCACTTGTCCGCTTTGCCGCCAGTTTGCAAACAGTGTTTTACCTTGTCGTCCTGGACGAGGGATGGAAACCGGAGCCTGGCACGCACCCAGTACCAAGAGCATGTCTACACTGGTGAAAGAAGTAGAAGACCTCCAGGAGCAGCTGGGCATTTTCCCA
Seq A exon
NA
Seq C2 exon
ATCGAGTCAAACCTGAGTAAAGAGATGGAATCTGTTATAAAGGACATTAAAAACACCACACAGAAGAAATACATGGATTATGGGAAGAACCCTGGGTCACCTGACAATGACTTCCTCTTCATGTACTCCGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042508-12-14,13-14-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF136391=zf-RING_2=PD(34.5=29.9)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCAGCTGGGCATTTTC
R:
TCAGGTGACCCAGGGTTCTTC
Band lengths:
127-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]