DreALTD0021607-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000042508 | ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1473]
Coordinates
chr9:3956798-3960780:-
Coord C1 exon
chr9:3960580-3960780
Coord A exon
chr9:3960544-3960579
Coord C2 exon
chr9:3956798-3956934
Length
36 bp
Sequences
Splice sites
5' ss Seq
CTGGTATTT
5' ss Score
3.5
3' ss Seq
GTTATTTTCCCTCTTCCCAGATC
3' ss Score
9.83
Exon sequences
Seq C1 exon
AATGATCAGGTTCTTCAGGGGATTTCTGTGGATAAAGGCGAGTTCACTTGTCCGCTTTGCCGCCAGTTTGCAAACAGTGTTTTACCTTGTCGTCCTGGACGAGGGATGGAAACCGGAGCCTGGCACGCACCCAGTACCAAGAGCATGTCTACACTGGTGAAAGAAGTAGAAGACCTCCAGGAGCAGCTGGGCATTTTCCCA
Seq A exon
GTAAGAGCCAGCATAAAGCAAAGAGATCCCATTCTG
Seq C2 exon
ATCGAGTCAAACCTGAGTAAAGAGATGGAATCTGTTATAAAGGACATTAAAAACACCACACAGAAGAAATACATGGATTATGGGAAGAACCCTGGGTCACCTGACAATGACTTCCTCTTCATGTACTCCGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042508-12-14,13-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF136391=zf-RING_2=PD(34.5=29.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCAGCTGGGCATTTTC
R:
TCAGGTGACCCAGGGTTCTTC
Band lengths:
127-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]