MmuEX0031484 @ mm9
Exon Skipping
Gene
ENSMUSG00000006476 | Nelf
Description
nasal embryonic LHRH factor [Source:MGI Symbol;Acc:MGI:1861755]
Coordinates
chr2:24912621-24914593:+
Coord C1 exon
chr2:24912621-24912696
Coord A exon
chr2:24913773-24913841
Coord C2 exon
chr2:24914541-24914593
Length
69 bp
Sequences
Splice sites
3' ss Seq
GACTTGCGGCGGTTTCTCAGGGT
3' ss Score
5.35
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATGATGTCCCCATCCGTACCTGGTTCCCCAAGGAAAACCTTTTCAGCTTCCAGACGGCAACCACAACTATGCAAGC
Seq A exon
GGTATTCAGGGGCTACGCGGAGAGGAAGCGTCGGAAACGGGAGAATGATTCCGCGTCTGTAATCCAGAG
Seq C2 exon
GAACTTCCGCAAACACCTGCGCATGGTTGGCAGTCGGCGGGTGAAGGCCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006476-'6-11,'6-10,9-11
Average complexity
S
Mappability confidence:
90%=83=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.646 C2=0.138
Domain overlap (PFAM):
C1:
PF0061222=IQ=PU(42.1=30.8)
A:
PF0061222=IQ=PD(52.6=41.7)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGTCCCCATCCGTACCT
R:
GACTGCCAACCATGCGCAG
Band lengths:
111-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: