HsaEX0042577 @ hg19
Exon Skipping
Gene
ENSG00000165802 | NELF
Description
nasal embryonic LHRH factor [Source:HGNC Symbol;Acc:29843]
Coordinates
chr9:140348843-140350938:-
Coord C1 exon
chr9:140350863-140350938
Coord A exon
chr9:140349691-140349759
Coord C2 exon
chr9:140348843-140348895
Length
69 bp
Sequences
Splice sites
3' ss Seq
GACTCGCGGTGGTTTCCCAGGGT
3' ss Score
4.91
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
ACGACATCCCTATTCGTACCTGGTTCCCCAAGGAAAATCTTTTCAGCTTCCAGACAGCAACCACAACTATGCAAGC
Seq A exon
GGTGTTCAGGGGCTACGCGGAGAGGAAGCGCCGGAAACGGGAGAATGATTCCGCGTCTGTAATCCAGAG
Seq C2 exon
GAACTTCCGCAAACACCTGCGCATGGTCGGCAGCCGGAGGGTGAAGGCCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165802_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.567 C2=0.131
Domain overlap (PFAM):
C1:
PF0061222=IQ=PU(42.1=30.8)
A:
PF0061222=IQ=PD(52.6=41.7)
C2:
NO
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACATCCCTATTCGTACCTGG
R:
CTTCACCCTCCGGCTGCC
Band lengths:
121-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)