GgaEX0012664 @ galGal4
Exon Skipping
Gene
ENSGALG00000008681 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr17:1738429-1744962:+
Coord C1 exon
chr17:1738429-1738504
Coord A exon
chr17:1741090-1741158
Coord C2 exon
chr17:1744910-1744962
Length
69 bp
Sequences
Splice sites
3' ss Seq
GGCTTAAAATGGTTTCCCAGGGC
3' ss Score
5.46
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATGATGTCCCCATACGAACCTGGTTCCCAAAAGAGAACCTCTTCAGTTTTCAAACTGCTACTACAACTATGCAAGC
Seq A exon
GGCATTCAGGGGCTACGCAGAAAGGAAGAGACGGAAACGAGAGAATGATTCTGCAGCTGTTATTCAGAG
Seq C2 exon
GAATTTTCGGAAGCACCTCCGCATGGTGGGGAGCCGAAGGGTTAAAGCACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008681_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.667 C2=0.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=PU(42.1=30.8)
A:
PF0061222=IQ=PD(52.6=41.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTCCCCATACGAACCTGG
R:
TTTGTGCTTTAACCCTTCGGCT
Band lengths:
127-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]