GgaEX1040519 @ galGal4
Exon Skipping
Gene
ENSGALG00000008681 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr17:1738429-1741158:+
Coord C1 exon
chr17:1738429-1738504
Coord A exon
chr17:1740522-1740527
Coord C2 exon
chr17:1741090-1741158
Length
6 bp
Sequences
Splice sites
3' ss Seq
3' ss Score
5' ss Seq
5' ss Score
Exon sequences
Seq C1 exon
ATGATGTCCCCATACGAACCTGGTTCCCAAAAGAGAACCTCTTCAGTTTTCAAACTGCTACTACAACTATGCAAGC
Seq A exon
CATCTC
Seq C2 exon
GGCATTCAGGGGCTACGCAGAAAGGAAGAGACGGAAACGAGAGAATGATTCTGCAGCTGTTATTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008681-MICROEX1-2/2
Average complexity
MIC-M
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.333 C2=0.667
Domain overlap (PFAM):
C1:
PF0061222=IQ=PU(42.1=30.8)
A:
NA
C2:
PF0061222=IQ=PD(52.6=41.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCCCATACGAACCTGGT
R:
TCCGTCTCTTCCTTTCTGCGT
Band lengths:
108-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]