GgaINT1020041 @ galGal4
Intron Retention
Gene
ENSGALG00000008681 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr17:1738429-1741158:+
Coord C1 exon
chr17:1738429-1738504
Coord A exon
chr17:1738505-1741089
Coord C2 exon
chr17:1741090-1741158
Length
2585 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
GGCTTAAAATGGTTTCCCAGGGC
3' ss Score
5.46
Exon sequences
Seq C1 exon
ATGATGTCCCCATACGAACCTGGTTCCCAAAAGAGAACCTCTTCAGTTTTCAAACTGCTACTACAACTATGCAAGC
Seq A exon
GTAAGTGAAACCACTGCCTTAAGTTTGGTTGTGTATCTCCAAGTCTGTGGCTCACTCCAAACTATATCTGAGAGCACAGAGCAAATTAAACTGTGTATTTGACACTGCAGCCTGGGGAGAGGGCACTTTGTTTCGCTCATTCTTTTTTGCACTCTATTTCTGTTTCCTACTATTCCCTCTTGTGTAAGTTCTTGTGCTATGCAGTCCTCCTCTGCTTCTCTTATTTTCCTGTGACGCTGTCCCTGACTGCCTCTGCAGGGCAGGGGTGCTGTGGGAATGCCAGCTGAGACCTTCCACCACTACCCCTGCTGCAGCCACTGCTCTGAGGGAATGTTAATCCAGGCCTGCCCCGCATCCATCGCTCCAGAGAAGTGTATCTCTGTATTATGAGATGTAGCCTTACAGCTTAAGGTGCTTTTCTGGTCATTTGAAAAAGGTGTCAGTAAAAATCTGCAAAGTGTGAGAGAATCTGGTTTAGGAATACTTTCTCCCTTCACACTGCATGCAGGATTTGGTGCTGCTGGCTGTTGTGCATGGAGAAGAGGCTTTTCTCAAAGGACTTAAGAGAGAAAGTGAAGCCTCATTTCGAGATTGCACCCAGCTTGGTTTGAGGTATTTCTTACCTGGCTGAAAAGGGAAGGCAGGCAGTGAAGGAGAAGAGTTGCTGTTCTGCTTTTTAAAGTCTTTCTCTGGCCTTGTCACCTTCTTGTCCTTCGTCCTGTATCCATGTCACCCTCCTCTCCACTGCTCCCTTTATTTCTGCTTGTTTAACCTGGTCTCCATTTTGTAATCTGTTTCTCTGCCAGCTCTTTCCCTCAGACATCGCCCTCCCCGGGTGCCCAAGAGAAAGCTGGTGGTTGATCTTGGGATAACCCCGACTGAATCAGATCTGCAGTGATAAGGTGGAGAAGGCTGGATTCAGTGCTGGGGAGAGGGTAGCTGCTGAAATACAGAAGGGACCCCTCTCTCCTAGAAGATAGAGCTTATCTTCATGCTCTTTCACTCCTCACATATCCCAGCACAGCTGGGAGTGCAGCCCGTCCTGGGGAACAGAACGGAGGGCATTTGCATGGTGCCACTCTGCAGCTCCTTGTGCTGCTTCTCTTACTTAGCCTCCCATGTCCCTCTGCCTCCTCTCTGAAGGCTGCAAGTCTGGTGGTACCTTCAGCTGGTTAATGCTCATTGGCACTGGACTGACAGGGCCTGTGAGCAGTCTGAGGGCAATTTGCTGGATTTCTGCTTTGCTCTTTATGAACACTGGTATTTTAGAGTTCTGATCTGGCAAACTGGACCATGCACAAACCCAGCACATTTCATTTGCTGGTGAGCACGTTCTTTGTTACCTGCAGTCACCTTTGCTGTGTGTGTGGTTTGTGGCAGGATGCTGGGCTTGGAGCTAATGGAGACCAAAATCAGGCAGGTTTGGAGAATGGTGCCCTAAGGAAACCCACGAGGAGCACAGTTCCCTTGTTTAAGGTAGTTGCTAAGATAAAATCTCTAGGAAGTCTGAGCTGCCTCTGGAATTCACACAGAAACATCTCCAAGAGTTCAGGGCACCTCCTTGATCTGGCTGGGAGGTTCCCAAGCCCCTGGCTTCTGCTGTAGAGTTTTCAGCTCTGGGCTTGCTTCCTTCACAGGGTGGGCAGTGCGGGCTGATTTCACAAGTCACAGGTGCTCAGGGGAGAAGACCTCCCTGCTCCATAACCCCCCATACTGAGCTGCTGCTGTAGTCTGACAGGCAGCATTCTGTTGTCAGTTTTACACCTGCATGTTCTTTGGGTCTGCATGGGGACCCAACGAAGTAATTTGTACCATGTGATGATGCTGCCTTGGAGGTTTTAGCTCGGTCAAGCTGGTGTTTAACCACTGAGAACTAACTTAAAAAGTGATTTCCTTCCACCTAACGAGAGATATCCATCCCTTCTGGAGTGAGGATCCCCCTGGGATGCTGCACAGGGCTGAGCATTAACGAATTATTCTTCTTTCTCTTTTTCTTTGCATCTCCTGGAATCCCTAGCATCTCGTAAGTATGATCTTCTATTTTTCATTTCTGTCTGTTGATGTATGGGATAAAATGTCCTCTCCTCTCCTGTCCAGCATATTCATTCATGCTTTCCCTGTGCTAGGACTGTTGGTCAGCTGAGAAGAGGTTAGATGGCTACATCTAGATGGTTAGAGTTAGATGCTGTGCCTGTATGGATCACACCGCAGCCATCCTCACCTTCAGGATGAAGGCTAGCAAGCTTTTGTCCCTCTTGAAACTGGTGCACAGAGGCTTTGTGTCTGCAGTCTCCTAGGTGTGTTCCTCCGCAGCAGGGATGACAGCTGTTGGCCTCTATTCTTTGGGTAGTTCTGTGGCCACTGCTGTGCTTTCTTTAGGAGCCATCTACTCTAGAGAGTGAGGACCTTTGGTTTGGTGACTGTTGGCCAGCCCTTGACTCACACACAGTCCTGCAAGGCCCAGCTGTCTCCCTCAGGCAGCCTAGTCTCTTTCTGTTGTCTGGTGAGAGCTTTCCTGTCTGCATCTCATGTCCTCTCCCGTTCAAAGCTGTGGAGTTGGTTAATGGCTTAAAATGGTTTCCCAG
Seq C2 exon
GGCATTCAGGGGCTACGCAGAAAGGAAGAGACGGAAACGAGAGAATGATTCTGCAGCTGTTATTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008681:ENSGALT00000014129:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF0061222=IQ=PU(42.1=30.8)
A:
NA
C2:
PF0061222=IQ=PD(52.6=41.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]