HsaINT0112676 @ hg19
Intron Retention
Gene
ENSG00000165802 | NELF
Description
nasal embryonic LHRH factor [Source:HGNC Symbol;Acc:29843]
Coordinates
chr9:140349691-140350938:-
Coord C1 exon
chr9:140350863-140350938
Coord A exon
chr9:140349760-140350862
Coord C2 exon
chr9:140349691-140349759
Length
1103 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
GACTCGCGGTGGTTTCCCAGGGT
3' ss Score
4.91
Exon sequences
Seq C1 exon
ACGACATCCCTATTCGTACCTGGTTCCCCAAGGAAAATCTTTTCAGCTTCCAGACAGCAACCACAACTATGCAAGC
Seq A exon
GTGAGTCTTGTGCCCACGACTTGGGGTCAGGGTTGGGTGGTCTCTTTCTGCTGCTCAGGAAACAGCACTTTTTCCCAGTCTCTGGGCCTACCAGGGGGGCTGCTTCTGAACAGACCCACGTGCCTATGCTGTGCCAGGCCTGCCAGGGAGGCCAGGGCTGACTGCTCTTCCCCTCCCATGGCTGGTGCCCAGCCCCCCCCCCCACACACACACAGTCAGGGGACCTGGCCCAGGGCTGCAGCTGATGAGCTCTCAGTGGGGTGTGGGGTGTGGCAGGTTCTCCTGCTCCTATCCACTCTCCTCAGCCTGTGTCTGCCCTCCCTCAAACCCCAAATAGAAGCCTACTTCTGTTTCATACGTGCCATAGGTCATCACAGTTTCAGGGTCCCCGCAGGGACCTGCTCCTCTCTGTCTTGACATACATTTGGCTTTTCTGTTCTGGGATTCCTTCCAGGGAAGTTCCCTTTGCTGCATTGGTCCCCACACCAAAGAAGTGTCCTGCCCGGGGGAGTCCACCCCACACCCAGCCTCAGGCTGCCTGGTCTCAGCAACCAGTCCTTGTGGCATGGGCTGCAGTGACATCAGCTTCCGTTGCCCATTCAGGGCTGGCCAGCAGTGTAGCCAGCATCCTGCTGGTGGCTGGGTTACCTGTGAGGGACCTATTGGGTCAGTGACAAGAAGGGAACTGTAGGGACCGGGTGGGGGCTGAGGGGAGGCCCGGGGTTGAGCTCACTGTGTCTTCTCTCTCACGCCATCCCTTCTGGCCCTGGCTTCAGCATCTCGTAAGTACCTGTATGACTTGGTGCCTAAGGGCACAGCTGTTGTCCCTGGGGAGACCCTCCCACCCCAAATAGGTTTGGGCAGGCCAGGGACCTGGGTCTTGAGGGAGTGCCGCTCTCTGCGGGCCTGGCTCCCAGCGGGCACCGAGGTCGCAGCAGGGCCTGCTGGGAGCTGGGCCTCGACAGGTGAGGCAGGCTGGGACTCCTCTGCCGGGCCCCGTGCCCCAGACGCCCTGCTGGGCCCTCTGCTCGCACCACTGTCCCGACGTCTGTGTCCCTCCTGCCTCCGGCCAAGGGCAGTGCTGACTCGCGGTGGTTTCCCAG
Seq C2 exon
GGTGTTCAGGGGCTACGCGGAGAGGAAGCGCCGGAAACGGGAGAATGATTCCGCGTCTGTAATCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165802-NELF:NM_015537:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.567
Domain overlap (PFAM):
C1:
PF0061222=IQ=PU(42.1=30.8)
A:
NA
C2:
PF0061222=IQ=PD(52.6=41.7)
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)