BtaINT0104032 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030247 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr11:105676775-105678023:+
Coord C1 exon
chr11:105676775-105676850
Coord A exon
chr11:105676851-105677954
Coord C2 exon
chr11:105677955-105678023
Length
1104 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
GACTCGTGGCGGTTTCCCAGGGT
3' ss Score
4.04
Exon sequences
Seq C1 exon
ATGACGTCCCCATCCGTACCTGGTTCCCCAAGGAAAACCTCTTCAGTTTCCAGACAGCAACCACAACTATGCAAGC
Seq A exon
GTGAGTTGTGTCTGCTGTGCGCGGGGCCCAGGCCAGGGGCCTCTTCCTGCTGTTCAGGAGCTACTGCCCGGAGCCCACTTGGGCGGCCGCTCCCGAGCGCCCCCATTCCACCCGCTCTGCCTGAGTGTCAGCCTGCAGGAAGGCGGGCCTGGCTGCTCGCACCCCACCCCCACCCCCACCCTGTCCTGTCCCCACTGCCCTGCCCCGCGCGGTGCCGTCTCCTGGGGAGCGGGCGGGGGGCTGCGGCTGATGTAGTCACCAGCAGGGGTGCTTCTCCCGGGCTGCTGCCCAGCTCTGCCCTGCGCACGCTCCAAACAGCAGCCTCCTTGCGTTGCCACGCACCGCGAGCCATCACAGCTTAGTCCCCTGGGGGGCGTGCTCTTGCCCGTCACCCAGCTGGGTGAACGTTCTGTTGAGGAGTTCCCTCCAGGGCGGCACTCTGCTGCAGTGTCCCCTGCTCTGAAGACGCTCCCTGCAAGCTGCCTTGGGGCGTGCACTGCCGCCCTCAGGCTGAACAGGGGCCACTCTGCTGCGGGTCCCAGCAGGGCCAAGGCACACAGTCAGGCCTCTGAGCAGCCTGAGCAGCATCGGGTGGCCTGGGCCACCGTAACCTCAGCATCTGCTGCCCTTTCAAGGACTGGCCCGTGGCATAGCGGGCACCCTGGGGTGCCTGTGCGGGACCCTTCGAGTCAGGGACAAGAAGGAAACTAGCCCCGTGGGGTCAGAGGTCTGAGGGTCTCTGCTCACTGTGTCTTCTCCCTCACGCTGCCATTTCCCGCTGGGACTCCAGCATCTCGTAAGTACCAGGAGGACCTTGAGCCTGAGGGCGTGGTGGTGGTCCCTGGGGAACTCGCCCACCCCCACGTAGGTCGGGGCAGGCCAGGGACCTGGGCCCTGACCAGGAGGGCGTGCTGGGTCCTGGCGAGCAGTGAGCTGCACCAGGGCCTGTGGGGAGCTGGGCTGAGGACACGGCGAGGCAGGCTGGGACCCTCTGTCTGGCCCAGGGCCCTGGGTGCCTGCGGGCCCCATTCTCGAGCCTCCGTCCCCACGTCTGTCCCTCCCGCCTGCGGCCAAGGGCAGTGCTGACTCGTGGCGGTTTCCCAG
Seq C2 exon
GGTGTTCAGGGGCTACGCGGAGAGGAAGCGCCGGAAACGGGAGAATGATTCCGCGTCTGTAATCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030247:ENSBTAT00000016087:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.812
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development