HsaINT1025390 @ hg38
Intron Retention
Gene
ENSG00000165802 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr9:137455239-137456486:-
Coord C1 exon
chr9:137456411-137456486
Coord A exon
chr9:137455308-137456410
Coord C2 exon
chr9:137455239-137455307
Length
1103 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
GACTCGCGGTGGTTTCCCAGGGT
3' ss Score
4.91
Exon sequences
Seq C1 exon
ACGACATCCCTATTCGTACCTGGTTCCCCAAGGAAAATCTTTTCAGCTTCCAGACAGCAACCACAACTATGCAAGC
Seq A exon
GTGAGTCTTGTGCCCACGACTTGGGGTCAGGGTTGGGTGGTCTCTTTCTGCTGCTCAGGAAACAGCACTTTTTCCCAGTCTCTGGGCCTACCAGGGGGGCTGCTTCTGAACAGACCCACGTGCCTATGCTGTGCCAGGCCTGCCAGGGAGGCCAGGGCTGACTGCTCTTCCCCTCCCATGGCTGGTGCCCAGCCCCCCCCCCCACACACACACAGTCAGGGGACCTGGCCCAGGGCTGCAGCTGATGAGCTCTCAGTGGGGTGTGGGGTGTGGCAGGTTCTCCTGCTCCTATCCACTCTCCTCAGCCTGTGTCTGCCCTCCCTCAAACCCCAAATAGAAGCCTACTTCTGTTTCATACGTGCCATAGGTCATCACAGTTTCAGGGTCCCCGCAGGGACCTGCTCCTCTCTGTCTTGACATACATTTGGCTTTTCTGTTCTGGGATTCCTTCCAGGGAAGTTCCCTTTGCTGCATTGGTCCCCACACCAAAGAAGTGTCCTGCCCGGGGGAGTCCACCCCACACCCAGCCTCAGGCTGCCTGGTCTCAGCAACCAGTCCTTGTGGCATGGGCTGCAGTGACATCAGCTTCCGTTGCCCATTCAGGGCTGGCCAGCAGTGTAGCCAGCATCCTGCTGGTGGCTGGGTTACCTGTGAGGGACCTATTGGGTCAGTGACAAGAAGGGAACTGTAGGGACCGGGTGGGGGCTGAGGGGAGGCCCGGGGTTGAGCTCACTGTGTCTTCTCTCTCACGCCATCCCTTCTGGCCCTGGCTTCAGCATCTCGTAAGTACCTGTATGACTTGGTGCCTAAGGGCACAGCTGTTGTCCCTGGGGAGACCCTCCCACCCCAAATAGGTTTGGGCAGGCCAGGGACCTGGGTCTTGAGGGAGTGCCGCTCTCTGCGGGCCTGGCTCCCAGCGGGCACCGAGGTCGCAGCAGGGCCTGCTGGGAGCTGGGCCTCGACAGGTGAGGCAGGCTGGGACTCCTCTGCCGGGCCCCGTGCCCCAGACGCCCTGCTGGGCCCTCTGCTCGCACCACTGTCCCGACGTCTGTGTCCCTCCTGCCTCCGGCCAAGGGCAGTGCTGACTCGCGGTGGTTTCCCAG
Seq C2 exon
GGTGTTCAGGGGCTACGCGGAGAGGAAGCGCCGGAAACGGGAGAATGATTCCGCGTCTGTAATCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165802:ENST00000339554:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.630
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains