GgaINT0125023 @ galGal3
Intron Retention
Gene
ENSGALG00000008681 | NELF
Description
NA
Coordinates
chr17:2138739-2140987:+
Coord C1 exon
chr17:2138739-2138744
Coord A exon
chr17:2138745-2140918
Coord C2 exon
chr17:2140919-2140987
Length
2174 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTT
5' ss Score
4.72
3' ss Seq
GGCTTAAAATGGTTTCCCAGGGC
3' ss Score
5.46
Exon sequences
Seq C1 exon
CTTAAG
Seq A exon
GTGCTTTTCTGGTCATTTGAAAAAGGTGTCAGTAAAAATCTGCAAAGTGTGAGAGAATCTGGTTTAGGAATACTTTCTCCCTTCACACTGCATGCAGGATTTGGTGCTGCTGGCTGTTGTGCATGGAGAAGAGGCTTTTCTCAAAGGACTTAAGAGAGAAAGTGAAGCCTCATTTCGAGATTGCACCCAGCTTGGTTTGAGGTATTTCTTACCTGGCTGAAAAGGGAAGGCAGGCAGTGAAGGAGAAGAGTTGCTGTTCTGCTTTTTAAAGTCTTTCTCTGGCCTTGTCACCTTCTTGTCCTTCGTCCTGTATCCATGTCACCCTCCTCTCCACTGCTCCCTTTATTTCTGCTTGTTTAACCTGGTCTCCATTTTGTAATCTGTTTCTCTGCCAGCTCTTTCCCTCAGACATCGCCCTCCCCGGGTGCCCAAGAGAAAGCTGGTGGTTGATCTTGGGATAACCCCGACTGAATCAGATCTGCAGTGATAAGGTGGAGAAGGCTGGATTCAGTGCTGGGGAGAGGGTAGCTGCTGAAATACAGAAGGGACCCCTCTCTCCTAGAAGATAGAGCTTATCTTCATGCTCTTTCACTCCTCACATATCCCAGCACAGCTGGGAGTGCAGCCCGTCCTGGGGAACAGAACGGAGGGCATTTGCATGGTGCCACTCTGCAGCTCCTTGTGCTGCTTCTCTTACTTAGCCTCCCATGTCCCTCTGCCTCCTCTCTGAAGGCTGCAAGTCTGGTGGTACCTTCAGCTGGTTAATGCTCATTGGCACTGGACTGACAGGGCCTGTGAGCAGTCTGAGGGCAATTTGCTGGATTTCTGCTTTGCTCTTTATGAACACTGGTATTTTAGAGTTCTGATCTGGCAAACTGGACCATGCACAAACCCAGCACATTTCATTTGCTGGTGAGCACGTTCTTTGTTACCTGCAGTCACCTTTGCTGTGTGTGTGGTTTGTGGCAGGATGCTGGGCTTGGAGCTAATGGAGACCAAAATCAGGCAGGTTTGGAGAATGGTGCCCTAAGGAAACCCACGAGGAGCACAGTTCCCTTGTTTAAGGTAGTTGCTAAGATAAAATCTCTAGGAAGTCTGAGCTGCCTCTGGAATTCACACAGAAACATCTCCAAGAGTTCAGGGCACCTCCTTGATCTGGCTGGGAGGTTCCCAAGCCCCTGGCTTCTGCTGTAGAGTTTTCAGCTCTGGGCTTGCTTCCTTCACAGGGTGGGCAGTGCGGGCTGATTTCACAAGTCACAGGTGCTCAGGGGAGAAGACCTCCCTGCTCCATAACCCCCCATACTGAGCTGCTGCTGTAGTCTGACAGGCAGCATTCTGTTGTCAGTTTTACACCTGCATGTTCTTTGGGTCTGCATGGGGACCCAACGAAGTAATTTGTACCATGTGATGATGCTGCCTTGGAGGTTTTAGCTCGGTCAAGCTGGTGTTTAACCACTGAGAACTAACTTAAAAAGTGATTTCCTTCCACCTAACGAGAGATATCCATCCCTTCTGGAGTGAGGATCCCCCTGGGATGCTGCACAGGGCTGAGCATTAACGAATTATTCTTCTTTCTCTTTTTCTTTGCATCTCCTGGAATCCCTAGCATCTCGTAAGTATGATCTTCTATTTTTCATTTCTGTCTGTTGATGTATGGGATAAAATGTCCTCTCCTCTCCTGTCCAGCATATTCATTCATGCTTTCCCTGTGCTAGGACTGTTGGTCAGCTGAGAAGAGGTTAGATGGCTACATCTAGATGGTTAGAGTTAGATGCTGTGCCTGTATGGATCACACCGCAGCCATCCTCACCTTCAGGATGAAGGCTAGCAAGCTTTTGTCCCTCTTGAAACTGGTGCACAGAGGCTTTGTGTCTGCAGTCTCCTAGGTGTGTTCCTCCGCAGCAGGGATGACAGCTGTTGGCCTCTATTCTTTGGGTAGTTCTGTGGCCACTGCTGTGCTTTCTTTAGGAGCCATCTACTCTAGAGAGTGAGGACCTTTGGTTTGGTGACTGTTGGCCAGCCCTTGACTCACACACAGTCCTGCAAGGCCCAGCTGTCTCCCTCAGGCAGCCTAGTCTCTTTCTGTTGTCTGGTGAGAGCTTTCCTGTCTGCATCTCATGTCCTCTCCCGTTCAAAGCTGTGGAGTTGGTTAATGGCTTAAAATGGTTTCCCAG
Seq C2 exon
GGCATTCAGGGGCTACGCAGAAAGGAAGAGACGGAAACGAGAGAATGATTCTGCAGCTGTTATTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008681:ENSGALT00000014129:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.583
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]