BtaEX0025001 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030247 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr11:105677546-105678922:+
Coord C1 exon
chr11:105677546-105677646
Coord A exon
chr11:105677955-105678023
Coord C2 exon
chr11:105678870-105678922
Length
69 bp
Sequences
Splice sites
3' ss Seq
GACTCGTGGCGGTTTCCCAGGGT
3' ss Score
4.04
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
ACAAGAAGGAAACTAGCCCCGTGGGGTCAGAGGTCTGAGGGTCTCTGCTCACTGTGTCTTCTCCCTCACGCTGCCATTTCCCGCTGGGACTCCAGCATCTC
Seq A exon
GGTGTTCAGGGGCTACGCGGAGAGGAAGCGCCGGAAACGGGAGAATGATTCCGCGTCTGTAATCCAGAG
Seq C2 exon
GAACTTCCGCAAACACCTGCGCATGGTCGGCAGCCGGCGGGTGAAGGCCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030247-'9-8,'9-7,10-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.812 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000016087fB4812
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGAAACTAGCCCCGTGG
R:
CGACCATGCGCAGGTGTTT
Band lengths:
127-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development