BtaEX0025002 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030247 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr11:105676775-105678023:+
Coord C1 exon
chr11:105676775-105676850
Coord A exon
chr11:105677641-105677646
Coord C2 exon
chr11:105677955-105678023
Length
6 bp
Sequences
Splice sites
3' ss Seq
ATTTCCCGCTGGGACTCCAGCAT
3' ss Score
1.55
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
ATGACGTCCCCATCCGTACCTGGTTCCCCAAGGAAAACCTCTTCAGTTTCCAGACAGCAACCACAACTATGCAAGC
Seq A exon
CATCTC
Seq C2 exon
GGTGTTCAGGGGCTACGCGGAGAGGAAGCGCCGGAAACGGGAGAATGATTCCGCGTCTGTAATCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030247-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.333 C2=0.812
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000016087fB4812
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTTTCCAGACAGCAACCAC
R:
CAGACGCGGAATCATTCTCCC
Band lengths:
93-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development