RnoEX0061203 @ rn6
Exon Skipping
Gene
ENSRNOG00000008810 | Nsmf
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:RGD Symbol;Acc:619819]
Coordinates
chr3:2264926-2266089:+
Coord C1 exon
chr3:2264926-2265001
Coord A exon
chr3:2265731-2265736
Coord C2 exon
chr3:2266015-2266089
Length
6 bp
Sequences
Splice sites
3' ss Seq
TCTTGACATTGTGGCTTCAGCAT
3' ss Score
4.03
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
ATGACGTCCCCATCCGTACCTGGTTCCCCAAGGAAAACCCTTTCAGCTTCCAGACGGCAACCACAACTATGCAAGC
Seq A exon
CATCTC
Seq C2 exon
TCTCAGGGTATTCAGGGGCTACGCGGAGAGGAAGCGTCGGAAACGGGAGAATGATTCCGCGTCTGTAATCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008810-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.269 A=0.250 C2=0.952
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCAGCTTCCAGACGGCAA
R:
CAGACGCGGAATCATTCTCCC
Band lengths:
102-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]