MmuEX0026645 @ mm9
Exon Skipping
Gene
ENSMUSG00000009207 | Lnp
Description
limb and neural patterns [Source:MGI Symbol;Acc:MGI:1918115]
Coordinates
chr2:74389118-74407185:-
Coord C1 exon
chr2:74406998-74407185
Coord A exon
chr2:74393045-74393103
Coord C2 exon
chr2:74389118-74389158
Length
59 bp
Sequences
Splice sites
3' ss Seq
GAACTTTGCTTCCTCTCTAGCAT
3' ss Score
7.06
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GAAATTCAAGCATTGGAAGAATTTAGAGAAAAAAATCAGAGATTGCAAAAATTATGGGTTGGAAGATTAATTATCTATTCTTCAATTCTTTACCTGTTTACCTGTTTAATTGTGTACTTGTGGTATCTTCCTGATGAGTTTACAGCAAGACTTGTCATGACACTCCCATTTTTTGCTTTTCCTTTGAT
Seq A exon
CATCTGGACATTAAGAACTGTACTTATTTTCTTCTTTTCCAAGAGAACAGAGAGAAATA
Seq C2 exon
ATGAAGCATTGGATGATTTAAAATCCCAGAAGAAAAAGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009207_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
PF136871=DUF4153=FE(60.2=100)
A:
PF136871=DUF4153=FE(19.4=100)
C2:
PF136871=DUF4153=PD(9.7=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAATTCTTTACCTGTTTACCTGT
R:
TCTGGGATTTTAAATCATCCAATGCT
Band lengths:
139-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: