RnoEX0050293 @ rn6
Exon Skipping
Gene
ENSRNOG00000001593 | Lnpk
Description
lunapark, ER junction formation factor [Source:RGD Symbol;Acc:1312042]
Coordinates
chr3:61467130-61484606:-
Coord C1 exon
chr3:61484419-61484606
Coord A exon
chr3:61469662-61469720
Coord C2 exon
chr3:61467130-61467170
Length
59 bp
Sequences
Splice sites
3' ss Seq
GAATTTTGCTTCCTTTCTAGCAT
3' ss Score
7.59
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GAAATTCAAGCATTGGAAGAATTTAGAGAAAAAAATCAGAGATTGCAAAAATTATGGGTTGGAAGATTAATTATCTATTCTTCAATTCTTTATCTGTTTACATGTTTAATTGTGTACTTGTGGTATCTTCCTGATGAATTTATAGCAAGACTTGTCATGACACTCCCATTCTTTGCTTTTCCTTTGAT
Seq A exon
CATCTGGACATTAAGAACTGTGCTTATTTTCTTCTTTTCCAAGAGAACAGAGAGAAATA
Seq C2 exon
ATGAAGCATTGGATGATTTAAAATCCCAGAAGAAAAAGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001593-'12-9,'12-8,14-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.214
Domain overlap (PFAM):
C1:
PF136871=DUF4153=FE(61.4=100)
A:
PF136871=DUF4153=FE(19.8=100)
C2:
PF136871=DUF4153=PD(7.9=57.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGTTTAATTGTGTACTTGTGGT
R:
TTTCTTCTGGGATTTTAAATCATCCA
Band lengths:
124-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]