DreEX6020735 @ danRer10
Exon Skipping
Gene
ENSDARG00000006639 | lnpb
Description
limb and neural patterns b [Source:ZFIN;Acc:ZDB-GENE-030131-9455]
Coordinates
chr6:10623041-10623704:-
Coord C1 exon
chr6:10623517-10623704
Coord A exon
chr6:10623268-10623326
Coord C2 exon
chr6:10623041-10623081
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCCTCTATTTATAGAGT
3' ss Score
10.15
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
Exon sequences
Seq C1 exon
GACATAAAGGATCTGGAGGAGTTTCGTGCAAAGAACCAGCGTTTGCTGAAGTTATGGGTCGGCCGGCTTCTCTTCTACTCATCTGCTCTGTACCTGCTGACATGTCTGTGTGTTTATTACCTGTACTTCCCCCAGCAGTGGGGCGCTCGGCTCATCACTGCCCTGCCTCTGCTGGCCTTTCCTGCACT
Seq A exon
AGTTTTACTACTACGAAAAGTGCTCATTTTCCTGTTCTCCAAACGCACAGAGAGAAACA
Seq C2 exon
ATGACAAATTGGAAGATTTAAAAACGCAAAAACGGAAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006639-'8-7,'8-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.378
Domain overlap (PFAM):
C1:
PF083957=7tm_7=FE(44.3=100),PF110263=DUF2721=FE(50.0=100),PF060117=TRP=FE(56.9=100),PF074317=DUF1512=PU(20.0=22.2)
A:
PF083957=7tm_7=FE(14.3=100),PF110263=DUF2721=FE(16.1=100),PF060117=TRP=FE(18.3=100),PF074317=DUF1512=FE(28.6=100)
C2:
PF083957=7tm_7=FE(9.3=100),PF110263=DUF2721=FE(10.5=100),PF060117=TRP=FE(11.9=100),PF074317=DUF1512=FE(18.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTCTGTACCTGCTGACA
R:
CCGTTTTTGCGTTTTTAAATCTTCCA
Band lengths:
142-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]