BtaEX6008935 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018061 | KIAA1715
Description
Bos taurus KIAA1715 (KIAA1715), mRNA. [Source:RefSeq mRNA;Acc:NM_001075989]
Coordinates
chr2:20949319-20971982:+
Coord C1 exon
chr2:20949319-20949506
Coord A exon
chr2:20967784-20967842
Coord C2 exon
chr2:20971937-20971982
Length
59 bp
Sequences
Splice sites
3' ss Seq
GATTTTTGCTTCTTCTATAGCAT
3' ss Score
7.45
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GAAATTCAAGCATTGGAAGAATTTAGGGAAAAAAATCAGAGATTACAAAAATTATGGGTTGGAAGATTAATTCTGTACTCTTCAGTCCTCTATCTATTTACATGTTTAATTGTATACTTATGGTATCTTCCGGATGAACTTACAGCAAGACTTGCCATGACACTCCCATTTTTTGCTTTCCCGTTAAT
Seq A exon
CATCTGGAGCATAAGAACAGTGCTTATTTTCTTCTTTTCCAAGAGAACAGAAAGAAATA
Seq C2 exon
ATGAAGCATTGGATGATTTAAAATCCCAGAAGAAAAAAATAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018061-'7-8,'7-5,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTACTCTTCAGTCCTCTATCT
R:
TCTGGGATTTTAAATCATCCAATGCT
Band lengths:
147-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]