GgaEX6042253 @ galGal3
Exon Skipping
Gene
ENSGALG00000009283 | KIAA1715
Description
NA
Coordinates
chr7:17486638-17492853:+
Coord C1 exon
chr7:17486638-17486825
Coord A exon
chr7:17489681-17489739
Coord C2 exon
chr7:17492813-17492853
Length
59 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTTTCTGTTTTGAAGAAT
3' ss Score
8.16
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GAAATACAGACCTTAGAAGAATTTAGAGAAAAAAATCAGAGACTTCAGAAACTATGGGTTGGAAGGCTACTCTTCTACTCTTCACTTCTTTATCTTGCCACCTGCTTAATTGTATATTTGTGGTGTCTTCCTGATGAATGGACAGCAAGGTTTTTTATGACACTTCCATTTTTTGCATTTCCACTGAT
Seq A exon
AATCTGGTTTATAAGAACACTGCTCATTTTTTTCTTTTCCAAGAGGACAGAAAGGAATA
Seq C2 exon
ATGATGCGCTGGAAGATTTAAAATCTCAAAAGAAAAAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009283-'4-6,'4-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCTTTATCTTGCCACCTGC
R:
AGATTTTAAATCTTCCAGCGCATCA
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]