GgaEX6042253 @ galGal4
Exon Skipping
Gene
ENSGALG00000009283 | KIAA1715
Description
KIAA1715 [Source:HGNC Symbol;Acc:HGNC:21610]
Coordinates
chr7:15874991-15881206:+
Coord C1 exon
chr7:15874991-15875178
Coord A exon
chr7:15878034-15878092
Coord C2 exon
chr7:15881166-15881206
Length
59 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTTTCTGTTTTGAAGAAT
3' ss Score
8.16
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GAAATACAGACCTTAGAAGAATTTAGAGAAAAAAATCAGAGACTTCAGAAACTATGGGTTGGAAGGCTACTCTTCTACTCTTCACTTCTTTATCTTGCCACCTGCTTAATTGTATATTTGTGGTGTCTTCCTGATGAATGGACAGCAAGGTTTTTTATGACACTTCCATTTTTTGCATTTCCACTGAT
Seq A exon
AATCTGGTTTATAAGAACACTGCTCATTTTTTTCTTTTCCAAGAGGACAGAAAGGAATA
Seq C2 exon
ATGATGCGCTGGAAGATTTAAAATCTCAAAAGAAAAAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009283-'8-8,'8-6,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000015103fB8734
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCTTTATCTTGCCACCTGC
R:
AGATTTTAAATCTTCCAGCGCATCA
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]