HsaEX0034250 @ hg19
Exon Skipping
Gene
ENSG00000144320 | KIAA1715
Description
KIAA1715 [Source:HGNC Symbol;Acc:21610]
Coordinates
chr2:176835492-176857146:-
Coord C1 exon
chr2:176856959-176857146
Coord A exon
chr2:176844538-176844596
Coord C2 exon
chr2:176835492-176835532
Length
59 bp
Sequences
Splice sites
3' ss Seq
GAATTTTGCTTCCCTTTTAGCAT
3' ss Score
8
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GAAATTCAAGCATTGGAAGAATTTAGGGAAAAAAATCAGAGATTACAAAAATTATGGGTTGGAAGATTAATTCTGTATTCCTCAGTTCTCTATCTGTTTACATGCTTAATTGTATATTTGTGGTATCTTCCTGATGAATTTACAGCAAGACTTGCCATGACACTCCCATTTTTTGCTTTTCCATTGAT
Seq A exon
CATCTGGAGCATAAGAACAGTAATTATTTTCTTCTTTTCCAAGAGAACAGAAAGAAATA
Seq C2 exon
ATGAAGCATTGGATGATTTAAAATCCCAGAGGAAAAAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144320_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.190
Domain overlap (PFAM):
C1:
PF083957=7tm_7=FE(44.6=100)
A:
PF083957=7tm_7=FE(14.4=100)
C2:
PF083957=7tm_7=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGTTCTCTATCTGTTTACATGC
R:
TCCTCTGGGATTTTAAATCATCCA
Band lengths:
142-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)