DreEX6034733 @ danRer10
Exon Skipping
Gene
ENSDARG00000063646 | lnpa
Description
limb and neural patterns a [Source:ZFIN;Acc:ZDB-GENE-030131-4960]
Coordinates
chr9:2029655-2031609:+
Coord C1 exon
chr9:2029655-2029842
Coord A exon
chr9:2031375-2031433
Coord C2 exon
chr9:2031569-2031609
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTTCTCTTCTGAAGGAT
3' ss Score
10.7
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
GATATCCAGGTCCTTGAGGAATACAGAGAGAAGAACCATAAGCAGCTGAAGCTATGGGTTTACAGACTGCTGTTGTACTCCGCTCTGCTGTACCTGATGGCCTGTGCAGTCGTATACGCGTGGTACATCCCGGAGCGGATGATAGGAAAATTAATAGTGGCATCACCCTTCTTACTGTTCCCTCTGCT
Seq A exon
GATTTGGCTGCTGAGGAAACTGCTGATAGTTTTATACAACAAGCGAACAGAGAGAAACA
Seq C2 exon
ATGAAAAGTTAGAAGAGCTGAAAGCAGAGAAAAAGAAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063646-'4-8,'4-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.357
Domain overlap (PFAM):
C1:
PF083957=7tm_7=FE(44.3=100),PF074317=DUF1512=PU(20.0=22.2)
A:
PF083957=7tm_7=FE(14.3=100),PF074317=DUF1512=FE(28.6=100)
C2:
PF083957=7tm_7=FE(9.3=100),PF074317=DUF1512=FE(18.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCCGCTCTGCTGTACCTG
R:
TTTCTCTGCTTTCAGCTCTTCT
Band lengths:
145-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]