MmuEX0026645 @ mm10
Exon Skipping
Gene
ENSMUSG00000009207 | Lnpk
Description
lunapark, ER junction formation factor [Source:MGI Symbol;Acc:MGI:1918115]
Coordinates
chr2:74551061-74569128:-
Coord C1 exon
chr2:74568941-74569128
Coord A exon
chr2:74554988-74555046
Coord C2 exon
chr2:74551061-74551101
Length
59 bp
Sequences
Splice sites
3' ss Seq
GAACTTTGCTTCCTCTCTAGCAT
3' ss Score
7.06
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GAAATTCAAGCATTGGAAGAATTTAGAGAAAAAAATCAGAGATTGCAAAAATTATGGGTTGGAAGATTAATTATCTATTCTTCAATTCTTTACCTGTTTACCTGTTTAATTGTGTACTTGTGGTATCTTCCTGATGAGTTTACAGCAAGACTTGTCATGACACTCCCATTTTTTGCTTTTCCTTTGAT
Seq A exon
CATCTGGACATTAAGAACTGTACTTATTTTCTTCTTTTCCAAGAGAACAGAGAGAAATA
Seq C2 exon
ATGAAGCATTGGATGATTTAAAATCCCAGAAGAAAAAGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009207_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.204
Domain overlap (PFAM):
C1:
PF136871=DUF4153=FE(60.2=100)
A:
PF136871=DUF4153=FE(19.4=100)
C2:
PF136871=DUF4153=PD(9.7=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAATTCTTTACCTGTTTACCTGT
R:
TCTGGGATTTTAAATCATCCAATGCT
Band lengths:
139-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types