MmuEX0026644 @ mm10
Exon Skipping
Gene
ENSMUSG00000009207 | Lnpk
Description
lunapark, ER junction formation factor [Source:MGI Symbol;Acc:MGI:1918115]
Coordinates
chr2:74554988-74570976:-
Coord C1 exon
chr2:74570935-74570976
Coord A exon
chr2:74568941-74569128
Coord C2 exon
chr2:74554988-74555046
Length
188 bp
Sequences
Splice sites
3' ss Seq
GAATACTTTTCTCTTAACAGGAA
3' ss Score
9.77
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCAAAACCTTCAACAGTAGAAGTTCTAGAAAATATAGATAAG
Seq A exon
GAAATTCAAGCATTGGAAGAATTTAGAGAAAAAAATCAGAGATTGCAAAAATTATGGGTTGGAAGATTAATTATCTATTCTTCAATTCTTTACCTGTTTACCTGTTTAATTGTGTACTTGTGGTATCTTCCTGATGAGTTTACAGCAAGACTTGTCATGACACTCCCATTTTTTGCTTTTCCTTTGAT
Seq C2 exon
CATCTGGACATTAAGAACTGTACTTATTTTCTTCTTTTCCAAGAGAACAGAGAGAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009207_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF136871=DUF4153=PU(8.7=64.3)
A:
PF136871=DUF4153=FE(60.2=100)
C2:
PF136871=DUF4153=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAACCTTCAACAGTAGAAGT
R:
TTCTCTCTGTTCTCTTGGAAAAGA
Band lengths:
98-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types