RnoEX0050298 @ rn6
Exon Skipping
Gene
ENSRNOG00000001593 | Lnpk
Description
lunapark, ER junction formation factor [Source:RGD Symbol;Acc:1312042]
Coordinates
chr3:61469662-61486154:-
Coord C1 exon
chr3:61486113-61486154
Coord A exon
chr3:61484419-61484606
Coord C2 exon
chr3:61469662-61469720
Length
188 bp
Sequences
Splice sites
3' ss Seq
GAATACTTTTCTCTTAACAGGAA
3' ss Score
9.77
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCAAAACCTTCAACAGTAGAAGTTCTAGAAAATATAGATAAG
Seq A exon
GAAATTCAAGCATTGGAAGAATTTAGAGAAAAAAATCAGAGATTGCAAAAATTATGGGTTGGAAGATTAATTATCTATTCTTCAATTCTTTATCTGTTTACATGTTTAATTGTGTACTTGTGGTATCTTCCTGATGAATTTATAGCAAGACTTGTCATGACACTCCCATTCTTTGCTTTTCCTTTGAT
Seq C2 exon
CATCTGGACATTAAGAACTGTGCTTATTTTCTTCTTTTCCAAGAGAACAGAGAGAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001593-'9-8,'9-5,12-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF136871=DUF4153=PU(8.9=64.3)
A:
PF136871=DUF4153=FE(61.4=100)
C2:
PF136871=DUF4153=FE(19.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAACCTTCAACAGTAGAAGT
R:
TTCTCTCTGTTCTCTTGGAAAAGA
Band lengths:
98-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]