BtaEX6008936 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018061 | KIAA1715
Description
Bos taurus KIAA1715 (KIAA1715), mRNA. [Source:RefSeq mRNA;Acc:NM_001075989]
Coordinates
chr2:20948573-20967842:+
Coord C1 exon
chr2:20948573-20948614
Coord A exon
chr2:20949319-20949506
Coord C2 exon
chr2:20967784-20967842
Length
188 bp
Sequences
Splice sites
3' ss Seq
ATGAATTTTTCTCTTCACAGGAA
3' ss Score
10.19
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
ACGAAACCTTCAACTGTAGAGGTTCTGGAAAATATAGATAAG
Seq A exon
GAAATTCAAGCATTGGAAGAATTTAGGGAAAAAAATCAGAGATTACAAAAATTATGGGTTGGAAGATTAATTCTGTACTCTTCAGTCCTCTATCTATTTACATGTTTAATTGTATACTTATGGTATCTTCCGGATGAACTTACAGCAAGACTTGCCATGACACTCCCATTTTTTGCTTTCCCGTTAAT
Seq C2 exon
CATCTGGAGCATAAGAACAGTGCTTATTTTCTTCTTTTCCAAGAGAACAGAAAGAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018061-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAACCTTCAACTGTAGAGGT
R:
TTTCTTTCTGTTCTCTTGGAAAAGA
Band lengths:
99-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]