GgaEX1031922 @ galGal4
Exon Skipping
Gene
ENSGALG00000009283 | KIAA1715
Description
KIAA1715 [Source:HGNC Symbol;Acc:HGNC:21610]
Coordinates
chr7:15873777-15878092:+
Coord C1 exon
chr7:15873777-15873821
Coord A exon
chr7:15874991-15875178
Coord C2 exon
chr7:15878034-15878092
Length
188 bp
Sequences
Splice sites
3' ss Seq
TTGAACCTATTTATTTACAGGAA
3' ss Score
9.15
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
CAGGCAAAGCCTTCTACTGTAGAAGTATTAGAAAAAATTGATAAG
Seq A exon
GAAATACAGACCTTAGAAGAATTTAGAGAAAAAAATCAGAGACTTCAGAAACTATGGGTTGGAAGGCTACTCTTCTACTCTTCACTTCTTTATCTTGCCACCTGCTTAATTGTATATTTGTGGTGTCTTCCTGATGAATGGACAGCAAGGTTTTTTATGACACTTCCATTTTTTGCATTTCCACTGAT
Seq C2 exon
AATCTGGTTTATAAGAACACTGCTCATTTTTTTCTTTTCCAAGAGGACAGAAAGGAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009283_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAAGCCTTCTACTGTAGA
R:
TCCTTTCTGTCCTCTTGGAAAAGA
Band lengths:
99-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]