HsaEX0034249 @ hg38
Exon Skipping
Gene
ENSG00000144320 | LNPK
Description
lunapark, ER junction formation factor [Source:HGNC Symbol;Acc:HGNC:21610]
Coordinates
chr2:175979810-175993223:-
Coord C1 exon
chr2:175993182-175993223
Coord A exon
chr2:175992231-175992418
Coord C2 exon
chr2:175979810-175979868
Length
188 bp
Sequences
Splice sites
3' ss Seq
GAATAATTTTCTCTTAACAGGAA
3' ss Score
9.4
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ACAAAACCTTCAACTGTAGAAGTTCTAGAAAGTATAGATAAG
Seq A exon
GAAATTCAAGCATTGGAAGAATTTAGGGAAAAAAATCAGAGATTACAAAAATTATGGGTTGGAAGATTAATTCTGTATTCCTCAGTTCTCTATCTGTTTACATGCTTAATTGTATATTTGTGGTATCTTCCTGATGAATTTACAGCAAGACTTGCCATGACACTCCCATTTTTTGCTTTTCCATTGAT
Seq C2 exon
CATCTGGAGCATAAGAACAGTAATTATTTTCTTCTTTTCCAAGAGAACAGAAAGAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144320_MULTIEX1-4/12=3-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083957=7tm_7=FE(9.4=100)
A:
PF083957=7tm_7=FE(44.6=100)
C2:
PF083957=7tm_7=FE(14.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAACCTTCAACTGTAGAAGTTCT
R:
TTTCTTTCTGTTCTCTTGGAAAAGA
Band lengths:
99-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development