DreEX6034734 @ danRer10
Exon Skipping
Gene
ENSDARG00000063646 | lnpa
Description
limb and neural patterns a [Source:ZFIN;Acc:ZDB-GENE-030131-4960]
Coordinates
chr9:2026438-2031433:+
Coord C1 exon
chr9:2026438-2026479
Coord A exon
chr9:2029655-2029842
Coord C2 exon
chr9:2031375-2031433
Length
188 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCCTCTTTCTCTCAGGAT
3' ss Score
11.5
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCTAAACCATCCACTGTAGAGGTCTTGGAGGGTCTTGATAAG
Seq A exon
GATATCCAGGTCCTTGAGGAATACAGAGAGAAGAACCATAAGCAGCTGAAGCTATGGGTTTACAGACTGCTGTTGTACTCCGCTCTGCTGTACCTGATGGCCTGTGCAGTCGTATACGCGTGGTACATCCCGGAGCGGATGATAGGAAAATTAATAGTGGCATCACCCTTCTTACTGTTCCCTCTGCT
Seq C2 exon
GATTTGGCTGCTGAGGAAACTGCTGATAGTTTTATACAACAAGCGAACAGAGAGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063646-'3-7,'3-5,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083957=7tm_7=FE(9.3=100)
A:
PF083957=7tm_7=FE(44.3=100),PF074317=DUF1512=PU(20.0=22.2)
C2:
PF083957=7tm_7=FE(14.3=100),PF074317=DUF1512=FE(28.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAAACCATCCACTGTAGAGGT
R:
TGTTTCTCTCTGTTCGCTTGTTGT
Band lengths:
101-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]