MmuALTD0011247-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000015090 | Ptgds
Description
prostaglandin D2 synthase (brain) [Source:MGI Symbol;Acc:MGI:99261]
Coordinates
chr2:25322229-25322865:-
Coord C1 exon
chr2:25322840-25322865
Coord A exon
chr2:25322807-25322839
Coord C2 exon
chr2:25322229-25322351
Length
33 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
CCTCTTGTTCTTTTGTCCAGGTG
3' ss Score
10
Exon sequences
Seq C1 exon
ATAAGTGCATTCAAGAGTAAACGCAG
Seq A exon
GTGAGAGAAGTCAGTCAGAGGGCTGGTCACATG
Seq C2 exon
GTGACCTGGCCTCAGGACTCCTTTGCTCTGTCACTCTCAAGATCCCAGCCCTGGCTCCCCAAAGTACCTCTACACCCTCCAGCTTTGCCTTGACAAAGAAATAAAAGTCCAAAGCAAGTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015090-6-10,7-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PD(0.1=0.0),PF0144313=Viral_helicase1=PD(6.6=71.4)
A:
NA
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCATTCAAGAGTAAACGCA
R:
TTGTCAAGGCAAAGCTGGAGG
Band lengths:
119-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: