MmuEX0025049 @ mm9
Exon Skipping
Gene
ENSMUSG00000059742 | Kcnh7
Description
potassium voltage-gated channel, subfamily H (eag-related), member 7 [Source:MGI Symbol;Acc:MGI:2159566]
Coordinates
chr2:62675123-62688835:-
Coord C1 exon
chr2:62688407-62688835
Coord A exon
chr2:62683811-62683831
Coord C2 exon
chr2:62675123-62675337
Length
21 bp
Sequences
Splice sites
3' ss Seq
CCCTCATGTGCTCAAAACAGACA
3' ss Score
6.17
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGAAACTTTTTGGGTTCAAATTTCCTGGACTGAGAGTTCTAACATACAGAAAACAGTCCTTGCCACAGGAAGACCCGGATGTGGTAGTTATTGATTCTTCTAAACACAGCGATGACTCTGTGGCCATGAAGCACTTTAAGTCTCCCACGAAAGAAAGTTGCAGTCCCTCTGAAGCAGATGATACGAAAGCCTTGATACAGCCTAGCCAGTGTTCTCCCTTAGTGAACATATCAGGACCTCTGGACCATTCCTCTCCCAAAAGACAATGGGACCGCCTCTACCCTGACATGCTGCAGTCAAGTTCCCAACTAACACACTCCAGGTCAAGGGAGAGCCTCTGTAGCATACGGAGGGCATCTTCAGTTCATGATATAGAAGGGTTCAGTGTCCACCCCAAGAACATATTTAGAGATCGACATGCCAGTGAAG
Seq A exon
ACAATGGTCGAAATGTCAAAG
Seq C2 exon
GACCTTTTAATCATATCAAGTCAAGCCTGCTGGGATCCACATCAGATTCAAACCTCAATAAGTACAGCACCATTAACAAGATCCCACAACTCACTCTGAATTTCTCAGATGTCAAAACAGAAAAGAAGAATACATCCCCTCCTTCTTCAGACAAAACTATTATTGCACCCAAGGTTAAAGAAAGGACACACAACGTGACCGAGAAAGTAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059742-'6-5,'6-3,7-5
Average complexity
C1
Mappability confidence:
100%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=1.000 C2=0.382
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAGGGCATCTTCAGTTCA
R:
TCCCAGCAGGCTTGACTTGAT
Band lengths:
118-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: