HsaEX6016302 @ hg38
Exon Skipping
Gene
ENSG00000184611 | KCNH7
Description
potassium voltage-gated channel subfamily H member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr2:162504443-162518158:-
Coord C1 exon
chr2:162517730-162518158
Coord A exon
chr2:162512654-162512674
Coord C2 exon
chr2:162504443-162504657
Length
21 bp
Sequences
Splice sites
3' ss Seq
TCCTTATGTGCTCAAAACAGACA
3' ss Score
6.07
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGAAATTTTTTGGGTTCAAATTCCCTGGTCTGAGAGTTCTCACTTACAGAAAGCAGTCCTTACCACAAGAAGACCCCGATGTGGTGGTCATCGATTCATCTAAACACAGTGATGATTCAGTAGCCATGAAGCATTTTAAGTCTCCTACAAAAGAAAGCTGCAGCCCCTCTGAAGCAGATGACACAAAAGCTTTGATACAGCCCAGCAAATGTTCTCCCTTGGTGAATATATCCGGACCTCTTGACCATTCCTCTCCCAAAAGGCAATGGGACCGACTCTACCCTGACATGCTGCAGTCAAGTTCCCAGCTGTCCCATTCCAGATCAAGGGAAAGCTTATGTAGTATACGGAGAGCATCTTCGGTCCATGATATAGAAGGATTCGGCGTCCACCCCAAGAACATATTTAGAGACCGACATGCCAGCGAAG
Seq A exon
ACAATGGTCGCAATGTCAAAG
Seq C2 exon
GGCCTTTTAATCATATCAAGTCAAGCCTCCTGGGATCCACATCAGATTCAAACCTCAACAAATACAGCACCATTAACAAGATTCCACAGCTCACTCTGAATTTTTCAGAGGTCAAAACTGAGAAAAAGAATTCATCACCTCCTTCTTCAGATAAAACCATTATTGCACCCAAGGTTAAAGATCGAACACACAATGTGACTGAGAAAGTGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184611-'9-18,'9-15,11-18
Average complexity
S
Mappability confidence:
100%=100=83%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.525 A=1.000 C2=0.431
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGCATCTTCGGTCCATG
R:
TCCCAGGAGGCTTGACTTGAT
Band lengths:
116-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains