BtaEX0018829 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001899 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr2:34022538-34037905:+
Coord C1 exon
chr2:34022538-34022966
Coord A exon
chr2:34028139-34028159
Coord C2 exon
chr2:34037691-34037905
Length
21 bp
Sequences
Splice sites
3' ss Seq
TCCTTACGTGCTCAAAACAGACA
3' ss Score
5.79
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGAAACTTTTTGGGTTCAAATTCCCTGGTCTGAGAGTTCTCACTTACAGAAAGCAGTCTTTACCACAAGAAGATCCTGATGTGGTAGTGATTGAGTCATCTAAACACAGTGATGACTCCGTAGCCATGAAGCACTTAAAGTCTCCAACAAAAGAAAGCTGCAGCCCCTCGGAAGCAGACGACACAAAAGCCTTGATACAACCCAGCAAATGTTCCCCCTTGGTGAATATCTCTGGACCTCTTGACCATTCCTCTCCCAAAAGGCAATGGGACCGACTCTACCCTGACATGCTGCAGTCAAGTTCCCAGCTGACTCATTCCAGATCAAAGGAAAGCATTTGTAGTATACGGAGGGCTTCCTCGGTTCATGATATAGAAGGATTCAGTGTCCATCCCAAGAACATATTTAGAGATCGACACGCCAGTGAAG
Seq A exon
ACAATGGTCGCAATGTTAAAG
Seq C2 exon
GGCCTTTTAATCATATCAAGTCAAGCCTCCTGGGATCCACGTCGGATTCAAACCTCAACAAATACAGCACCATTAACAAGATTCCACAGCTCACTCTGAATTTTTCAGATGTCAAAGCTGAAAAAAAGAATGCATCCCCTCCTTCTTCAGATAAAACCATTATTGCGCCCAAAGTTAAAGATCGAACACACAATGTGACAGAGAAAGTTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001899-'1-3,'1-1,2-3
Average complexity
S
Mappability confidence:
100%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=1.000 C2=0.306
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCTTCCTCGGTTCATGAT
R:
TCCCAGGAGGCTTGACTTGAT
Band lengths:
114-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development