RnoEX0046051 @ rn6
Exon Skipping
Gene
ENSRNOG00000007528 | Kcnh7
Description
potassium voltage-gated channel subfamily H member 7 [Source:RGD Symbol;Acc:621112]
Coordinates
chr3:48801236-48815130:-
Coord C1 exon
chr3:48814702-48815130
Coord A exon
chr3:48810124-48810144
Coord C2 exon
chr3:48801236-48801450
Length
21 bp
Sequences
Splice sites
3' ss Seq
TCCTTATATGCTCAAAACAGACA
3' ss Score
4.42
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGAAACTTTTTGGGTTCAAATTTCCTGGTCTGAGAGTTCTAACATACAGAAAGCAGTCCTTGCCGCAGGAAGACCCGGACGTGGTAGTCATTGATTCTTCTAAGCACAGCGATGACTCTGTGGCTATGAAGCACTTTAAGTCTCCCACGAAAGAAAGCTGCAGTCCCTCTGAAGCAGATGATACGAAGGCCTTGATACAGCCTAGCCAGTGTTCTCCCTTAGTGAACATATCAGGACCTCTGGACCATTCCTCTCCCAAAAGGCAATGGGACCGCCTCTACCCTGACATGCTGCAGTCAAGTTCCCAACTAACACACTCCAGGTCAAGGGAGAGCCTCTGTAGCATACGGAGAGCATCTTCAGTTCATGATATAGAAGGGTTCAATGTCCACCCCAAGAACATATTTAGAGATCGACATGCCAGTGAAG
Seq A exon
ACAATGGTCGAAATGTCAAAG
Seq C2 exon
GACCTTTCAATCATATCAAGTCAAGCCTGTTGGGATCCACATCAGATTCAAACCTCAACAAATACAGCACCATTAACAAGATCCCGCAACTCACTCTGAACTTTTCAGATGTCAAAACTGAGAAAAAGAATACTTCCCCGCCTTCTTCAGACAAAACTATTATTGCACCCAAGGTTAAAGAGAGGACACACAACGTGACAGAGAAGGTAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007528-'1-4,'1-2,2-4
Average complexity
S
Mappability confidence:
100%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=0.917 C2=0.324
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGTTCAATGTCCACCCC
R:
ATCTGATGTGGATCCCAACAGG
Band lengths:
102-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]