MmuINT0065122 @ mm9
Intron Retention
Gene
ENSMUSG00000036053 | Fmnl2
Description
formin-like 2 [Source:MGI Symbol;Acc:MGI:1918659]
Coordinates
chr2:52989446-52993236:+
Coord C1 exon
chr2:52989446-52989492
Coord A exon
chr2:52989493-52990873
Coord C2 exon
chr2:52990874-52993236
Length
1381 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
TGGCATTTTTCTCCTTACAGATC
3' ss Score
11.45
Exon sequences
Seq C1 exon
CCTTAAAGAAGAATAATATCACTAAATTTCCAAATGTTCACTCGAGG
Seq A exon
GTAAGGATTTCTTCTAGCACACCGGTGGTGGAGGATACACAGAGCTGGCAAGCATCACTTTTTACTTAGCTTCCTCCTCTTTCCTATATGCAGTTCACTGACTACTTATTTATGGTTAAGGGTAATACTGGTGAGAATCTGACCAGTCTTTGTGCCTCACACGAGTAATGTGTGGCTTTCTCAGCTGGCCTTTGTTTTATGATGGCTTGGCAAAAGGACTGCTGATTGTATTTGCTTCTCTCAATCATCTTGTTGGTCTACATGTTACTCAGTTAACTCCAGTTTCATCTGGATGAACACAGTGGGAAGTTGATCCATAGCATTTGAAAGATGAGGAAATTTCACAAATAGTTGATCTGAGGACCCCTAAACCACAGGGCTTTGGGAATATTAGATTAACTGTAACTCTGTTTTGTTTAGTCTGAGATGGACTAGACAGGCCACAGTTTATAGTTATTTAGGAGCCTGTTGGGGATAAGTCCAAGAGGGTGGGTCTATTCCACTCAACTCCAGTTTGATTTGCCCTGTAGAATGTTCACCAAGTATTAGTTTCTATGTAAACTGTCAACTTAAAAATAGGTCCATTTTAAAAGATTGAGTTTATAATAAAATTACATACTAATGAGAAAATGAAGAAACCTTTTTGTTTTGTCACGTCTTAACTCATAAGGCTAAATGCTGGCTAGACTATCAGGCTCATTTATGGGAGCATGCTTTCATACTAAGAGTGCTTACCTAAAATCCCTGTTACTCCATTTCATCTCACTAAAACAATGCTGCCTTCACCCAGAATGCACTGCACTGGCTTGACTTCCTCATTCACAGCCTTTTTCAAATGTGAAACATTCTGCCTGCATTAGGAATAACCTGGAAAGTTGGAGTTGGGCCTATTTCCCGTGTAGATTGGAGTAGAAACAGAATAGGCGGCAGGAGACTATTGAAGGAGTGAGATATTAAGTACTATTTCTAGTTCATAAGAAAAGTCAAGTATCTAAAGCGGTATAAACAATTGTTCTGCAGTTCCTTCTTGTCTTATCCTTATTAAAACTATAAAGACAAGACAGTTTGTTTTGTGAATTTTACACAAATCAGTTTTGAAGACTGAGCACAGTTGCTTCCAATTGGAGAGATATTTCAAAATATTTCAACTAGCCAAGCTACTGTGATAGAAATAATCTCTATGTCTCAGAGTCCTACCAGTATTACATCTTATTTTAATTGTAAATGCTCAAGGAAGATGTACACCTTTGGTTGAATGCTCCATGGGCTTGAAGGGCCTGTTAGTTGACTCTACACAAGCTGCTTTGACTGGCTGCCAACTAGCTTCTGTCTTGCTGAGATGTACTTGACTGTCTTTTCATTGGCATTTTTCTCCTTACAG
Seq C2 exon
ATCTTAGAAACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCATGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTCTCAAGGGCTCAGATTTAACAAACACATAGGAATTTTAAAGTGATGGGTTCTCTTTTTAACCCCTGTTAACAAGTGCCTAAAATTGGAAGTAACTTGCTCAGATTAATCAAAGCAATAGGTTTGACTTAAATCTTTTTACATCAGTATGTTACTCAGTTTTTTAACCAAAATGTAAACTTCATATTAAATTCATTATTTGCCATTTTGATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGTGTGTGCTATGGGTATCCTTTGCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAACTCCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTCTTTAGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATTTTATCCTATTTCATGTTGTTTCTGTGCAAGGCTGCCATGCACAAAGGCATTCACTTGTATGACTTCAAGATGGCATAAAACATTGAAGACTTATTTGCAGAACTGTGTTAAGCTAGAGGCAGCTTTTAATAACGCAAAGGTTTCTTAATTAGCACTAAAATTAATGTCTCAGTATTCTGATTTTTGAGGACCATTATGGGTGAATCCTTAAAATAGAAATTGGTGCCTTGTTAGTCAGGGAGATTTTTACCACAAGCTCTATCAGTAAGCATTCAAAAATTACATGTATTAATGTAATGTTGGGAACCTGGCCTTATTCTCTTCTGACAATCGAAGGGTCCTTTTTTTTTTTTCTTCCCTTTGTAAATTATACTGATACAGTTGACATTAAGTTATCAGGGCTGAATTGCTTTATGCATTTCTTACTTATGGGAAATTCCCATTAAATTAACATTGAGATTAAGTTTAAATTATCCGCGATAGGGTTAAATGGTTGACTAAGTCACTCACCTTTACTTCCTCACTGACAAGGCATTTCCATCTTTCCCAAAGTCAAAGACTGGACTGAAGCTAAATTTGTACTTTTCATAATATATATTCTGCTTCTGGCTTACCTTGTTGGTACATCAGTATATTAATTGTAAAAATTATTGTATAGTATTTAACCACCAAATCTGTGTTCATGTGAACCCCTTGGTGAAGGCCCCCTTTTCATGGATGTGTAGTTATATGATCTTTAAAATGTACAGATATTTTGCTATAAGATTGGTGCAGTTTTTTATGGTTTTTACACTTCTCTTTAATTCCTACCTAAGCCTTTAGGTACTACTGTAAATATTGTTTTAAAATGCATCAGCCTATGCTACACAATCTGAATGTTACTTTAACTTATAGTTTGTTTTCTGAAATATATATATATTTAACTACAAGGACAGTTTAAAAGTCAGTTACCACATTTCACAGTAGTATGCCTATTTACAGATCCCTTTTAAACTGCCACTTGCTGTCACACTCATAAATGTGTAGTTTAAAAAGAACATGCCAAGATTGTCGTCTTGTTGAGTCAATATCCATCTTGGTGAGTATATTAATTTGATCATGATATCAGAAAAATATGTGGACCTCCTTCACACAAATCAGCTGCTTTCCAAAGGCGTGCATTTGCTTAAAGCAAACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTCTGTCTAGTAATGGCCCTGCTTCTTAGCAATATTAGAAATGTTTTATAAAAGCAATCCATGTTACTTTTCTGGTCTTTTCATGCCATTTGAGCAAATAAACTATTTACACTACTATTCGGTCATATGTTCTAATCCTTTGTATATTTTATCTGTTTTAGAAAAACTGCTCCCTCATATTCTTTATTAAAAAAAAAAGAGATATTGTCATCACCTACATATAAAGAAAGGCTCCCCTGATCTCTCTTCACCCCTTCTCTTTCAGCTGTTACCTTGCCCCACTCTCTCTCCCAATAAACCTCAAGTGGAACTGTTAAAAAAAGTTGTGCTCCCAAGCCAAGAACACAAGCCTCTCCTCTCCTCTCCTGCCCAGTTCCCCAAGTTCTAATTAATTGCAATAGGACTTTTGACTTATTTAAAATGTCTTAAGGTATTACACATTTAGAATTTTTTGAATGTAACTAGAACAGTACAGCTCAAAGGATGATTTGGTTAGATTTAGAGATCATTTTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036053-Fmnl2:NM_172409:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.366 A=NA C2=0.904
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAATTTCCAAATGTTCACTCGAGG
R:
ACCTATTGCTTTGATTAATCTGAGCA
Band lengths:
326-1707
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: