MmuEX0019399 @ mm9
Exon Skipping
Gene
ENSMUSG00000036053 | Fmnl2
Description
formin-like 2 [Source:MGI Symbol;Acc:MGI:1918659]
Coordinates
chr2:52985887-52993236:+
Coord C1 exon
chr2:52985887-52986010
Coord A exon
chr2:52989446-52989539
Coord C2 exon
chr2:52990874-52993236
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGTTTTCTGTTTAGCCT
3' ss Score
7.81
5' ss Seq
CTGGCAAGC
5' ss Score
0.94
Exon sequences
Seq C1 exon
TCTCCTTCCCATAAATCAAAGAGGCAGCAGCAAGAGTTAATTGCGGAATTAAGAAGGCGACAAGTTAAAGATAACAGACATGTATACGAGGGAAAAGATGGCGCCATTGAAGACATTATCACAG
Seq A exon
CCTTAAAGAAGAATAATATCACTAAATTTCCAAATGTTCACTCGAGGGTAAGGATTTCTTCTAGCACACCGGTGGTGGAGGATACACAGAGCTG
Seq C2 exon
ATCTTAGAAACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCATGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTCTCAAGGGCTCAGATTTAACAAACACATAGGAATTTTAAAGTGATGGGTTCTCTTTTTAACCCCTGTTAACAAGTGCCTAAAATTGGAAGTAACTTGCTCAGATTAATCAAAGCAATAGGTTTGACTTAAATCTTTTTACATCAGTATGTTACTCAGTTTTTTAACCAAAATGTAAACTTCATATTAAATTCATTATTTGCCATTTTGATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGTGTGTGCTATGGGTATCCTTTGCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036053_MULTIEX1-2/2=C1-C2
Average complexity
ME(1-2[96=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=0.463 C2=0.904
Domain overlap (PFAM):
C1:
PF0028516=Citrate_synt=PD(25.8=95.2),PF145131=DAG_kinase_N=PD(20.5=71.4)
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACGAGGGAAAAGATGGCGC
R:
TGAAGGTGGTCTCCAGTCACA
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: