MmuALTD0005615-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000036053 | Fmnl2
Description
formin-like 2 [Source:MGI Symbol;Acc:MGI:1918659]
Coordinates
chr2:52989446-52992838:+
Coord C1 exon
chr2:52989446-52989492
Coord A exon
NA
Coord C2 exon
chr2:52990874-52992838
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
TGGCATTTTTCTCCTTACAGATC
3' ss Score
11.45
Exon sequences
Seq C1 exon
CCTTAAAGAAGAATAATATCACTAAATTTCCAAATGTTCACTCGAGG
Seq A exon
NA
Seq C2 exon
ATCTTAGAAACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCATGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTCTCAAGGGCTCAGATTTAACAAACACATAGGAATTTTAAAGTGATGGGTTCTCTTTTTAACCCCTGTTAACAAGTGCCTAAAATTGGAAGTAACTTGCTCAGATTAATCAAAGCAATAGGTTTGACTTAAATCTTTTTACATCAGTATGTTACTCAGTTTTTTAACCAAAATGTAAACTTCATATTAAATTCATTATTTGCCATTTTGATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGTGTGTGCTATGGGTATCCTTTGCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036053-37-37,39-37-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=NA C2=0.780
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTCCAAATGTTCACTCGAGG
R:
GGTGGTCTCCAGTCACATTGT
Band lengths:
145-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: