RnoALTD0011778-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000055567 | Fmnl2
Description
formin-like 2 [Source:RGD Symbol;Acc:1560248]
Coordinates
chr3:38674180-38675878:+
Coord C1 exon
chr3:38674180-38674226
Coord A exon
NA
Coord C2 exon
chr3:38675680-38675878
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
TGGCATTTTCCTCTTTACAGATC
3' ss Score
11
Exon sequences
Seq C1 exon
CCTTAAAGAAGAATAATATCACTAAATTTCCAAATGTTCACTCGAGG
Seq A exon
NA
Seq C2 exon
ATCTTAGAAACCAACCCTACAGAAGAGCCGATGCGGTGAGACGAAGTGTGAGGCGACGCTTTGATGATCAGAATTTGCGTTCTGTTAATGGTGGGGAAATAACAATGTGACCTGAGACCGCCTTCACGAGAAGGGTGTACATGAAACTGCCATTCCAGCCTTCAATACAGATGAAATACTCTCAAGGGCTCAGATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055567-36-36,37-36-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTCCAAATGTTCACTCGAGG
R:
GCGGTCTCAGGTCACATTGTT
Band lengths:
144-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]