RnoEX0036407 @ rn6
Exon Skipping
Gene
ENSRNOG00000055567 | Fmnl2
Description
formin-like 2 [Source:RGD Symbol;Acc:1560248]
Coordinates
chr3:38670570-38675878:+
Coord C1 exon
chr3:38670570-38670693
Coord A exon
chr3:38674180-38674273
Coord C2 exon
chr3:38675680-38675878
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGTTTTCTGTTTAGCCT
3' ss Score
7.81
5' ss Seq
CTGGCAAGC
5' ss Score
0.94
Exon sequences
Seq C1 exon
TCTCCTTCCCATAAATCAAAGAGGCAGCAGCAAGAGTTAATTGCAGAATTAAGAAGGCGACAAGTTAAAGATAACCGTCATGTGTACGAGGGAAAAGACGGCGCCATTGAAGACATTATCACAG
Seq A exon
CCTTAAAGAAGAATAATATCACTAAATTTCCAAATGTTCACTCGAGGGTAAGGATTTCTTCTAGCACACCGGTGGTGGAGGATACACAGAGCTG
Seq C2 exon
ATCTTAGAAACCAACCCTACAGAAGAGCCGATGCGGTGAGACGAAGTGTGAGGCGACGCTTTGATGATCAGAATTTGCGTTCTGTTAATGGTGGGGAAATAACAATGTGACCTGAGACCGCCTTCACGAGAAGGGTGTACATGAAACTGCCATTCCAGCCTTCAATACAGATGAAATACTCTCAAGGGCTCAGATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055567_MULTIEX1-2/2=C1-C2
Average complexity
ME(1-2[95=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.532 A=0.548 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
ENSRNOT00000085545fB5624
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGAGGCAGCAGCAAGAG
R:
GATCATCAAAGCGTCGCCTCA
Band lengths:
178-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]