RnoINT0061649 @ rn6
Intron Retention
Gene
ENSRNOG00000055567 | Fmnl2
Description
formin-like 2 [Source:RGD Symbol;Acc:1560248]
Coordinates
chr3:38670570-38674273:+
Coord C1 exon
chr3:38670570-38670693
Coord A exon
chr3:38670694-38674179
Coord C2 exon
chr3:38674180-38674273
Length
3486 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TGTTTTTGTTTTCTGTTTAGCCT
3' ss Score
7.81
Exon sequences
Seq C1 exon
TCTCCTTCCCATAAATCAAAGAGGCAGCAGCAAGAGTTAATTGCAGAATTAAGAAGGCGACAAGTTAAAGATAACCGTCATGTGTACGAGGGAAAAGACGGCGCCATTGAAGACATTATCACAG
Seq A exon
GTAAAGGGTATTTCGTCTGTGTGGTCTTTAGTGATCACACCGCCTCATCCAAGTGGGGCTACATACGGATGTTGCAGTTCCTTTTGGTAGCAGTGGAAAGCTCCTTAGTTAGGTTAATGAGATTTAGAATTACACAGCAAGATTGTAAACTAGGGTTATGCAAGTACCTTCTGATATTGTTTGCTGTCCAACACCTGAACAGTCTTGTCCCGTATGTATCTGTGGGGACCCTTAGGTATTCCTCCTTAAGTTCCTCATTGGTTTGATTTGTTATACTTCACCATTTCCTCCTTGTGGCCACTCTTAAATACTTACCTAATAGAAATGATGCAAGGGAAACCATTCTCTGTACTAACAGTTAATGTAGGTTTCTCTTGGCATGCTCTTAAAAAACCTCAAAGCCATCAGGAAGCTAATATTTTTGTTTGGATGAATCTTTAGGGTTCTGTCTCAGAACTGGAGACTGATATCAGCTGACCTAGCTTGAGGGTGTCTACACACACACACACCCCACAGCTTAGTATTTTCTGCTTGAACCAATTCTCCAGGGTTGTGTATTGCCTCTTACTACTCAGGGTGGTAACTTAGGCCATGGGCTATTTAGCAGTAAATAACTTTTGTTCAATGTCTTTTCCACATGAATGCTGTTTATCAGCTAAGATACATACCTAAGGCATTTTGCTCTTGTGGTAAGGTTTAAACCTATGTTGTAAAGTAAAGACAGTTATATGATGTTTGTGCAGCTAATGTCCATCCTGTTAAATGTACAAACTTGTACCTCTACCCTCTCCCTGAGGATCCAATCCCCAGGCCTTAGGGCATTCCCTCTAACCTCATTTGGAAATACTTACGTATGCATCTTTTAAAATTGACCAAAATATAACCACATTATTCTTTATCGCACTCAGAACTACATATTCTTTAATATTAGTGTGTAGTTACTCATATTTGTCAAATTCTAGTTTTTTAAAAATATAATTGATTCATTGCATTCTTGTAGTTTACTCAAAATTGTGAATAGGGATGTATAGGTTCTAAAACCACACTTTTTTGATCATCCTAAACACAGGGAAGTTAAGGTCGATATGTAGAGTAGATTTTTAAAGTCAATAAAGGATTCCTTGGCTGTTATTAAAGCAGCATAAATGAATGACTAGTGAAAATGGCAATCTCTTCTCACTGGGAGCCCAGTGTCTGCATGTATTCTGTAGTGGCTTGCATAGTCTTCCTTGTGGGTCATTTCTCTGCCTTCTCTGCACAGGGAAGTTCTACTCTGCATGTCCCATGAAGGTAAACACCTAGGTGCCACACCAAGATTCATCTGAGACTAGGGAAGCATCCAACTTTGCACATTAAGAACTCAAAAGACATAGGCCACAGTGGAACCTGTCTGTAATCCTAATACTGAGGATGTTGGAGGAAGGCAGATCAGGAGTTAAAGGTCATCTGTGACTAGAGTTTTTTTCAGCTCCTGCCTTAAAGACAAGAGAATGAAGCCATCCTCCATACCCACGACATCTTATGAAATGAATAATGTAGTTTTGTCTATATCTCAGAATAGATTTTCCTTCAGACTTTTCAGTTCTTGCTTCCCAACTCGGAAGTCGCACTTTCTTCTGACTTTAATGAACTGGAATACAAATTGCTTTCTCTCTTACCTACTCTTCCTCTTGCACTAACCATGTACTAATGCAATAGATGCTGGCTTTTTACTTGTTTGTTGTCTGGCTGTTATTCTCAATGCAGTGCTGAAGACTGTGCCCTTTACTGCTCGCACCGCCAAGCGTGGCTCTCGGTTTTTCTGCGAACCTGTTCTCACTGAAGAATACCATTACTAAACTATTGCTCTTTGTCACCTGATACTATTAAAAGGTCACTACAGGTTTTTTTTTTCTAAATCTTTATCTCCTCCTCCCCCACCCCTTACATATCCCATGTTAGGACCAAGCACTATGCGTGGAATGTTGTCTTCATTTTACATTTTTTTTGTTGTCTTCGTGCTGCATGGTTTTGTATTTCAGTCATGACTGTACACTCACTGCCATTTTCAGTACATGTATGTGTGTATGTATGTATGTACCACATTCCTGCAACAATATGGATGTGGGTGACAGTTAATAGAACCACTTGTAGACATTTTTAGTAGAATAAACAGTAAGTACTAAGAGCAGTATTTACTGTGCTTTAGTAGGTTTACTGATCAAATCTTCCTTCTCAACCCTTCTCTGTGCTAACACGTAATGAAATTATTAAAAGGGGCCCTTCTCTGTGCTAACACGTAATGAAATTATTAAAAGGGGCAGGGAACAATCAATTGATCCTGCAGGTTATAGTGCCTGCCACCAAGCCTGACAACTAAGATTGAGTCTCCTGCTGCCAAACGAAGGGAAAGAAGCAATTCAGGCAAACTGTCCTCTGAATGACTTCCTCACCCAAACCATGGCACATGCACTTCCTGCCAATATAAACCATAGATTGTCTATACTCTGTATGAAAATGAGAAAGGTTTTAAAGCTGCACTAAATTGGCCTTTCTCAGGTCTTATACAGTCCTAAGTGTGCTGGAACTCAATATGAGCTTTACACTGGGAACCCTTTCAACAATAAACCTTGAAAACATTGGCCTTAACCCAGCAGTTCAGGACCCATGGCCCCAAACACTGCCTTGGGCAGGTGACCTCTATTCACTGTCATGCCCCATTTCAGCTGTCAGCATTTCCATATTAAGAGCAGAGATGCAAGGCAGGAGGTGCAAGCAAAGACTAAAGAGCTCCCCATCTTTCTTATACCCCCTCACTGGTAACTCTGTTCCATGTCAAACCACAGTACTTTCTGGGGATGAGGTCATACCTCATCTGCTTGGCAGGACAATGGCAGCAGAAATACAGATAGTATACTTACTTACCATTGAAAGATTGCATTTTTCATAGAATTTAAAAACAAAGTAGGGAGGTCTAAGAGTTGTCCAAGTAGTTTCCTGGGCTTAGTATTTATGTTCAAAAAAGGAGCAAATATGTCTATGCATACTTGCTTAAAAAAGAATCAAAGAACATACTACCAATTGTCAATAGCCATTGACTACCTGTACTGAGGTTGACATGGAACCGGGTGTTTTGCGGCACAACTATTCTATGAGTTATATTTGCTAGGAGTGCTTGTCCTTGAATCAAAAGATCTGTCATTGCCTGCTCTGCAGTGTACTTAACCACCAGTGCTCATTAACTGGCTGAAAACTTTCATCTGCTCGGCTGTTTGCTGTTGGACTGTCTGTCTTTCTGGAGCCAATCTTCAAAGCAGCTTGAACCTGGGTGATCAGGGATGGGTGGGAAGTTGCTCGTCCTTCCCTGTTTAACCTAACACAACCTGTAGTGAAGCCTACGCCCTCTGTTAGCTAACATTCCCTGCATTGTTAAGCACTAAGTTGAGTTGCTTTGTTTTCATCCCATTTTTACTTAACCATCATTTTGTGTTTTTGTTTTCTGTTTAG
Seq C2 exon
CCTTAAAGAAGAATAATATCACTAAATTTCCAAATGTTCACTCGAGGGTAAGGATTTCTTCTAGCACACCGGTGGTGGAGGATACACAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055567:ENSRNOT00000085545:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.532 A=NA C2=0.548
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]