RnoEX0036406 @ rn6
Exon Skipping
Gene
ENSRNOG00000055567 | Fmnl2
Description
formin-like 2 [Source:RGD Symbol;Acc:1560248]
Coordinates
chr3:38670570-38675878:+
Coord C1 exon
chr3:38670570-38670693
Coord A exon
chr3:38672440-38672565
Coord C2 exon
chr3:38675680-38675878
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGCTGTTATTCTCAATGCAGTGC
3' ss Score
5.13
5' ss Seq
AAGGTCACT
5' ss Score
3.39
Exon sequences
Seq C1 exon
TCTCCTTCCCATAAATCAAAGAGGCAGCAGCAAGAGTTAATTGCAGAATTAAGAAGGCGACAAGTTAAAGATAACCGTCATGTGTACGAGGGAAAAGACGGCGCCATTGAAGACATTATCACAG
Seq A exon
TGCTGAAGACTGTGCCCTTTACTGCTCGCACCGCCAAGCGTGGCTCTCGGTTTTTCTGCGAACCTGTTCTCACTGAAGAATACCATTACTAAACTATTGCTCTTTGTCACCTGATACTATTAAAAG
Seq C2 exon
ATCTTAGAAACCAACCCTACAGAAGAGCCGATGCGGTGAGACGAAGTGTGAGGCGACGCTTTGATGATCAGAATTTGCGTTCTGTTAATGGTGGGGAAATAACAATGTGACCTGAGACCGCCTTCACGAGAAGGGTGTACATGAAACTGCCATTCCAGCCTTCAATACAGATGAAATACTCTCAAGGGCTCAGATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055567_MULTIEX1-1/2=C1-C2
Average complexity
ME(1-2[95=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.532 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000085545fB5624
Main Skipping Isoform:
ENSRNOT00000085545fB5623
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGAGGCAGCAGCAAGAG
R:
CTTCTCGTGAAGGCGGTCTCA
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]