GgaEX0018932 @ galGal3
Exon Skipping
Gene
ENSGALG00000012525 | FMNL2
Description
NA
Coordinates
chr7:37169934-37177148:+
Coord C1 exon
chr7:37169934-37170057
Coord A exon
chr7:37171732-37171864
Coord C2 exon
chr7:37174531-37177148
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGGCTGTTATTCCCATGCAGTGC
3' ss Score
6.91
5' ss Seq
AAGGTTGCT
5' ss Score
-0.35
Exon sequences
Seq C1 exon
TCTCCTTCTCATAAAACAAAGAGGCAGCAGCAGGAGCTAATTGCAGAGCTCAGGAGGCGGCAGGTCAAGGATAACAGGCATGTGTACGAAGGGAAGGATGGTGCTATTGAAGATATTATAACAG
Seq A exon
TGCTGAAGACTGTGCCCTTTACAGCTCGAACCGCCAAGCGGGGCTCTCGGTTTTTCTGCGAACCTGTTCTCACTGAGGAATTCCATTACTAAACTATTCCTCTTTCACATCTGATGCTCTTAGACAAAAAAAG
Seq C2 exon
ATCTTCGAAACCAGCCGTACCGCCGGGCCGACGCGCTGAGGAGGAGCGTGCGGCGGCGCTTCGACGACCAGACCCTGCGCTCCGCCAACGGCACTGAGATCACCATGTGAGCTGAGGCCTCTGCGGAGCCGGGCTGCCAGCGGTGCCCCTCCCTGACCGCCTTGGGAACAGTACGGTTACCCCTACAGGGCTCAGACACCTAGAAATGCATAGGAACGTCAGCGATGGGCTCTCCGCTCAGCCGTAGCTAACAAGTGCCTAAAATGGAAGTACCTGCTCAAATTAATCAAAGCAATAGGACTTGATTTGATTGGGTATCTTTTGACACCGATACGTTATTCAGTATTTTTAACCAAAAAGTAAAGTACGTGTTGTTTTGGGGTGTTTAGTTGGGTTTGATTATATGAAAACTTAGCCATCGGTCTCCTGTTGGCCGGGCCTGGATCCCGACTGGTTGGAAAGAGGTAACTCTGGATGTGCTCTGCTGCTGGGCTTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525_MULTIEX2-1/2=C1-C2
Average complexity
ME(1-2[98=100])
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.604 A=0.000 C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATGTGTACGAAGGGAAGG
R:
TAGGTGTCTGAGCCCTGTAGG
Band lengths:
250-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]