GgaALTD0005026-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000012525 | FMNL2
Description
NA
Coordinates
chr7:37173101-37174971:+
Coord C1 exon
chr7:37173101-37173147
Coord A exon
chr7:37173148-37173194
Coord C2 exon
chr7:37174531-37174971
Length
47 bp
Sequences
Splice sites
5' ss Seq
CTGGCAAGC
5' ss Score
0.94
3' ss Seq
CGCCGCTTTCCTCCCCGCAGATC
3' ss Score
13.74
Exon sequences
Seq C1 exon
CCCTAAAGAAGAATAATATCACTAAATTTCCAAATGTTCACTCGAGG
Seq A exon
GTAAGGATTTCTTCTAGCACACCGGTGGTGGAGGATACACAGAGCTG
Seq C2 exon
ATCTTCGAAACCAGCCGTACCGCCGGGCCGACGCGCTGAGGAGGAGCGTGCGGCGGCGCTTCGACGACCAGACCCTGCGCTCCGCCAACGGCACTGAGATCACCATGTGAGCTGAGGCCTCTGCGGAGCCGGGCTGCCAGCGGTGCCCCTCCCTGACCGCCTTGGGAACAGTACGGTTACCCCTACAGGGCTCAGACACCTAGAAATGCATAGGAACGTCAGCGATGGGCTCTCCGCTCAGCCGTAGCTAACAAGTGCCTAAAATGGAAGTACCTGCTCAAATTAATCAAAGCAATAGGACTTGATTTGATTGGGTATCTTTTGACACCGATACGTTATTCAGTATTTTTAACCAAAAAGTAAAGTACGTGTTGTTTTGGGGTGTTTAGTTGGGTTTGATTATATGAAAACTTAGCCATCGGTCTCCTGTTGGCCGGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525-37-31,38-31-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTCCAAATGTTCACTCGAGG
R:
GCCTCAGCTCACATGGTGATC
Band lengths:
141-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]