DreALTD0008202-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000012586 | fmnl2a
Description
formin-like 2a [Source:ZFIN;Acc:ZDB-GENE-081105-70]
Coordinates
chr9:4764057-4769973:-
Coord C1 exon
chr9:4769880-4769973
Coord A exon
NA
Coord C2 exon
chr9:4764057-4767304
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGCAAGC
5' ss Score
0.94
3' ss Seq
TTGTGTTCCTCCTACATCAGATC
3' ss Score
6.35
Exon sequences
Seq C1 exon
CCTTAAAGAAGAATAATATTACTAAATTCCCCAATGTGCACTGGAGAGTAAGGAACTCTTCCAGTAGTACCCCAGTGGATGCTACTCAGACCTG
Seq A exon
NA
Seq C2 exon
ATCTGAGAAACCAACCTTACAGGCGCGCTGATGCCGTCAGGAGGAGTGTCCGGAGACGCTTTGATGATCCCAATTTGCGGCCTGTCAACAACGCAGAGATGGTCATGTGACGAGGGCGGAGTGAATGTAGTGAATGGAATGGAGGAGTTGACAGCTCCAGAACAACGTAATGAAGGACTGAAGATGACAGCAGGTCTGAAAGTCAAGTGCCTACACTTAACATCTGTCCAATCAGGTGTTGAATCAAACGTGTAACTGTCTTCTGTTTGTAATTTTTGTTTGTTTTATACGAAAAGTGTCTTGATCTGTCTTATATCTTAAATCGTAGATGGCGAGATCAGTGTTTCTCTTGAGAAGGTGTCAGAATGTTAAACTATTCCAACACTTGCATCATAAACCTGTACAAAAGCTGAAACATTTCAGTGCTTTCGCCACATCTGATCAATCTGGATGAGCGACTTTTTAAAGTCGACCTGAAATGGAAGTTAAGATTGTCTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012586-33-31,34-31-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=NA C2=0.861
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
ENSDART00000016814fB2796
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAGTACCCCAGTGGATGCT
R:
GCACTTGACTTTCAGACCTGCT
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]