HsaALTD0002612-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000157827 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:18267]
Coordinates
chr2:153501948-153506348:+
Coord C1 exon
chr2:153501948-153501994
Coord A exon
chr2:153501995-153502041
Coord C2 exon
chr2:153504310-153506348
Length
47 bp
Sequences
Splice sites
5' ss Seq
CTGGCAAGC
5' ss Score
0.94
3' ss Seq
TGGCACTCTCCCCTTTACAGATC
3' ss Score
10.94
Exon sequences
Seq C1 exon
CCTTAAAGAAGAATAATATCACTAAATTTCCAAATGTTCACTCGAGG
Seq A exon
GTAAGGATTTCTTCTAGCACACCGGTGGTGGAGGATACACAGAGCTG
Seq C2 exon
ATCTTAGAAACCAACCATACAGACGAGCCGATGCGGTGAGGAGAAGCGTCAGGCGGCGCTTTGATGATCAGAACTTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGAACCTGAGACTGGCCTGCATGAATACAGGGTGTGCGTGAATGAAACTGCCCACATGAACTTTATGTGCTACGATTTAACTGCAGCCTTGAACACACACAAAAATATTCTTAAGGGCTCAGATTTAGCAAACACGGAAGAATTTTAAAATGAGCTCTCCTTTCAACCCTTGTTAACAAGTGCCTAAAAATGGAAGTACCTGTTCAGATTAATCAAAGCAATAGGATTTGATTTGATTAGGTATCTTTTTACACCAGTATGTTATTTTTAACCAAAATGTAAAGTTCTTATTAAACTCATTACCTGCCATTGTGATTGTCCCATCATGGCCCACCTGGTTTCCTGATGTTGTAAATAACATCAATGCATCTGCTGTGGGTCCTTTGCTGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157827-40-43,41-43-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTCCAAATGTTCACTCGAGG
R:
AGGCCAGTCTCAGGTTCACAT
Band lengths:
148-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)