HsaEX0026043 @ hg19
Exon Skipping
Gene
ENSG00000157827 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:18267]
Coordinates
chr2:153497305-153506348:+
Coord C1 exon
chr2:153497305-153497428
Coord A exon
chr2:153499933-153500058
Coord C2 exon
chr2:153504310-153506348
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGCTGTCATTTTCAATGCAGTGC
3' ss Score
5.48
5' ss Seq
AAGGTTGCT
5' ss Score
-0.35
Exon sequences
Seq C1 exon
TCTCCTTCTCATAAATCAAAGAGGCAGCAGCAAGAGTTAATTGCAGAATTAAGAAGACGACAAGTTAAAGATAACAGACATGTATATGAGGGAAAAGATGGTGCCATTGAAGATATTATCACAG
Seq A exon
TGCTGAAGACTGTGCCCTTTACTGCTCGCACCGCCAAGCGTGGCTCTCGGTTTTTCTGCGAACCTGTTCTCACTGAGGAATACCATTACTAAACTATTACTCTTTCTCACCTGATGCTCTTAAAAG
Seq C2 exon
ATCTTAGAAACCAACCATACAGACGAGCCGATGCGGTGAGGAGAAGCGTCAGGCGGCGCTTTGATGATCAGAACTTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGAACCTGAGACTGGCCTGCATGAATACAGGGTGTGCGTGAATGAAACTGCCCACATGAACTTTATGTGCTACGATTTAACTGCAGCCTTGAACACACACAAAAATATTCTTAAGGGCTCAGATTTAGCAAACACGGAAGAATTTTAAAATGAGCTCTCCTTTCAACCCTTGTTAACAAGTGCCTAAAAATGGAAGTACCTGTTCAGATTAATCAAAGCAATAGGATTTGATTTGATTAGGTATCTTTTTACACCAGTATGTTATTTTTAACCAAAATGTAAAGTTCTTATTAAACTCATTACCTGCCATTGTGATTGTCCCATCATGGCCCACCTGGTTTCCTGATGTTGTAAATAACATCAATGCATCTGCTGTGGGTCCTTTGCTGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157827_MULTIEX2-1/2=C1-C2
Average complexity
ME(1-2[98=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.000 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGAGGCAGCAGCAAGAG
R:
CGCACACCCTGTATTCATGCA
Band lengths:
254-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)