BtaEX0014798 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000026851 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:43648491-43656749:-
Coord C1 exon
chr2:43656626-43656749
Coord A exon
chr2:43654553-43654678
Coord C2 exon
chr2:43648491-43651186
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGACTGTTATTTCAATGCAGTGC
3' ss Score
6.3
5' ss Seq
AAGGTTGCT
5' ss Score
-0.35
Exon sequences
Seq C1 exon
TCTCCTTCCCACAAATCAAAAAGGCAGCAGCAAGAATTAATTGCCGAATTGAGAAGGCGGCAAGTTAAAGATAATAGACATGTATACGAAGGAAAAGATGGTGCCATTGAAGATATTATCACAG
Seq A exon
TGCTGAAGACTGTGCCCTTTACTGCTCGCACCGCCAAGCGTGGCTCTCGATTTTTCTGCGAACCTGTTCTCACTGAGGAATACCATTACTAAACTATTACTCTTTCTCACCTGATGCTCTTAAAAG
Seq C2 exon
ATCTTAGAAACCAACCATACAGACGAGCCGATGCGGTGAGGAGAAGTGTTAGGCGGCGCTTTGATGACCAGAACTTGCGTTCTGTTAATGGTGCCGAAATGACCATGTGAACCAGAGACCTGCTTGTGTGAATAGAGGGTGTGCGTGAATGAAGATGTCCATGTGAACTTTCTGTGCTACCATTTAACTGCAGCCTTGAACATAGATCAAATATTCTAAGGGCTCAGATTTAGCAAACACATAGGAATTTTTAAATGATGGGCTCTGCTTTCAACCTTTGTTAACAAGTGCCTAAAAGTGGAAGTACCTGCTCAGATTAATCAAAGCAATAGGATTTGATTTGATTAGTATCTTTTTACACCAGTATGTTATTTTTTAACCAAAATATAAATTTCATATTACATTCATTATCTGCCATTGTGATTGTCCCATGATGGCCCACCCTGGTTTCCTGATAAGTTGTAAATAACATGGAATGCATCTGCTGTGGGCTTCCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026851_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.536 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSBTAT00000038390fB2819
Main Skipping Isoform:
ENSBTAT00000038390fB2818
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCCGAATTGAGAAGGCGG
R:
CATCTTCATTCACGCACACCC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development