BtaINT0063179 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026851 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:43652958-43656749:-
Coord C1 exon
chr2:43656626-43656749
Coord A exon
chr2:43653052-43656625
Coord C2 exon
chr2:43652958-43653051
Length
3574 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TGTTTTTTTTTTCTGTTTAGCTT
3' ss Score
9.45
Exon sequences
Seq C1 exon
TCTCCTTCCCACAAATCAAAAAGGCAGCAGCAAGAATTAATTGCCGAATTGAGAAGGCGGCAAGTTAAAGATAATAGACATGTATACGAAGGAAAAGATGGTGCCATTGAAGATATTATCACAG
Seq A exon
GTAAAAGCTACTTCCTCATTGTGGCCCAGGGAGACCCCACTGGCCTCACTGTTTCTGGACCGTTTACAGATTTTGCTACTGCTTTTGTCCGGGGTTTACAAGTTCTTCAGTTGATTTTATCCAGATGCAGAATTACAGAGAAACGCCATGCTAGTGTTTGAAGTATGTGTATAGTAACCTGTATACTGCCTGTCAAAGAACTCCAACATTCTCTCTGAAGCAACAAAAAATTTCTCAATATCATGTTTCAGTATCTCAATATCATTGGAACCCTGAATATCATTCAACGTGGCTTCTCCTTCTAATGATGTCCTGTTGTCTTAGATTTGTCCCCATGCTCCATTTTCTCGCTCATGGCCACTTTTACCCATCTGCCTACTTACCGACAGGACCCATACTGTACTAACCACAGTCAACGCATGTTTTTTCAACATGCTCTTTAAAAGCCTTTTCACTCATTTAAAGTAAGTGAAGATGCTAGGAAATCAGTGCTTTCATGAGGATAGACCAACAGGTCAAAAGCCCAGAGGGTTGAGGAATGGTCATTCTCTCCGCTAGAAATCGTGCCTAACCCAGCTTTGTTCTTATCTAAGTTGTAGCCTAAGGCTTTCTGCTCAAACCAACTCTTCAGAGTTTCTGCATTCCCTGTTAAAGATGGGGGCAGTAATTTGGGGCAGTGGCTACAAGTGACTGCCTTTTCATATTTGTTGCCTAAAGTTTCTCAGCTTCCAAGATACTTAACACTTTTTGGTAGGAAATGTTGCACAAAAGAGTAGAGGAAACTCTGTAAAAGTATAGAGAATAGTACCCATCACCAGTCAGGAGTTTCCAGCTCATGGCCAATTTTGTTACATATCCGCTTCTACCTGTTCCCTTGGGATTATTTTGAAGCAAATCCAAGACATGCAATTTCCTTTAGAAGTATTTCCATATAATCTTTGAAAGATAAGGTCTGTTTAGTAAAAAAAAAAAAAAAGAAAAAGAAAAACAAGCATACCCACAGGGCCATTATCACATACCTCTGAAACAGAGTTCCTTAAAAAAAAAAGCCAGTCATTATTCATATTTCCTTAATTGTCCTATTTTTTAAAAAAAATATAACTCTCCAGATTTTTGATGTCTCATTTCTTGTTAATAGCTTAGTCAGCATTGAAAATAGGGATTATAAAATGGCCAAGTCAGGATTTTTTATCAGCTCAGACCCAAAGAAATAAACGAGGAGAATGAAGCACTAAAAAAGGAAGTCAATAAATAATTACTTGTCCAGAGTAGACCAGTGTGAGAAGTGGAATAGGTAAGTGGCTGATGAAAGTGCCAGCGTCTGCAGGGTACACGCGTGCCCTGTACCTCTGTGCCTGCCTGTGTCTGTTCGCCCCACAGTGGCTGGCAGGTGGCTCCCAGATAAAGCTTCCTTGTTTAGCATCTCCTTGTCTCCTCTGCATGGAGTGAGAAGCTCTGCTCTGAGCAAGACCAGAACAGATCTCCTTGGGTAAGCACTGTTGTAGCCTCAAGGACACAATGAGGTTGACTTGTAGGTAGAGGAGCATCCAGCCATGGCACATTAAGAACTCAGAGCTCCATTTTCATCAACCTGTTCTCCAGCTTAGTGACACTGGCTCATAAAATGTACAGTTTCTATTTGCCTGACCTGATCTACCATAGGAGGTAAATAAATATGTTTATGGAGTTTTTTTTTTTCCCCTTCTGCTTGGGCTATTTTCCATGATCTACTCAACCCTGCCCGAGATTGAGTAAAGATTGAGTAACTCTTCTAGGCTTTTTGAACTCACCTGGGTATATATTATATATTGCCTTCCCCGTTTCCTGCTCCCCTCCCTCACCCTTCCCCCAGGTATGATTAACAAAGCACTAACCATGTACTAATGCAGTAGATTGTGGCTTCTTACTCTCTTCTGTTTGTCTTGTTTGACTGTTATTTCAATGCAGTGCTGAAGACTGTGCCCTTTACTGCTCGCACCGCCAAGCGTGGCTCTCGATTTTTCTGCGAACCTGTTCTCACTGAGGAATACCATTACTAAACTATTACTCTTTCTCACCTGATGCTCTTAAAAGGTTGCTATGGATTTTTTGACCTCTAACGACCCTCTGTCTGTGTGTCAGGCCTACCCAGCAGTCTAGCATGGAACTGCCGTCTCCACTGTGGTGTATTTTATGTTGTCTTCATGCTGCATGGTTTCTCATTTCAGTCACAATTGCTGACTCACTAGCATTTTTAATACATCCTGAACCCACATGGCTGGGATGGTGTGTGCCAGTTGAATTAATACAATTACATATAGAAATTTTCAGAAAATGGAACACTTCTTTGAGAGTCAGGGTGGGGACGAACTAGGTTGCTTTTAAGATTTTGAGGCTAATATCTTTCAACATAAAATGACAGTCACCAATAACAATAATTACTGTTCCTACCATTTATTGAGCACTTTCTGTGTTGGAATAGATTTATATAGATATTAAACCAACCTTTTTGTGCTCAGCTTGCTTTGATAGTAAAATGAGCTGCTATACAAGCTCTCAGGAATACAAAGTGCTCTACAGATGCAAAATGATTTGCAAAAGGATCTGTGAAGTACACACACCTGTAAGTTGGATCTTAAGTGCCTTATGTAGTTCGTAGCCATCATCCACAGTGTGATGGAGCTCATGGTACAAGCTAAACTCAGGGAGCTCTTTAGATCTAGAGGCCTGTGTAAGCTGATATAGGTAATCCGTAGCTTTATATTCACTTTTCCTTCTGAGTGTCATGACCAAGTTTCAGCTGTCAGCAGTTCCGTTGGAGCAAGGCTGTGAACTAAGCAATGAATATAAAGGCTTGGGAGACCCCACTGTCTTCTCATTCATGCTTATTCACTGGTGGCTCTGTTCCATGTCAAACCCAGGGCATTACTACTGTGATGAGCTCATATCTGGATCTGCTTCTTTGGTCAAGATGGTGGCTAAATATTACTAGCAAATATCTTTTATTGGCAAATGCTACTGTTCTTGAAAATAAAAGAAAAACACGATCAACCTTTCCCAAGAAATAAGCCTGGGCTTCATTTCTGATGGCTGAATAAGGAATAAACTTCTCTGTTGATTACAAGAGTGACAAAGGAAACACACACTTTGAGTATATGAAATAGCCGCTATTTGACTGCCATGCTGAGATTGACATGGAACCAGTTACATGTTTAGTTTGTGGCGTTTTCTTCTCTGAATTGCACTTGTTATGTATGCTCTTCTGTGTCTGAAGATAAGGATGTGGTATGTCGTTGCCTGTGCTGCAGTGTGCTTACCCACCAGTGCTTATTAACAAGGCTATTGTCAGCTTTGCTGCCGGACTGTTTCTGGAGCCAAACTTCAAAGCAGCTTGGATCTGGGTGGTCAGAGCTGGGTGGGAAGGCATGCTCGCCCTTCCCTGGTTTTCTCTAACACCTCTTGTAGTCTGGCTTCCTTTCTTCTTCTGTTGGCTAACATGCCCGGGAATGTTATTCACAAAGTTGAATTGCTTTCCATATTCATCCCATTTTTACTTAACCATCATTTTGTGTTTTTGTTTTTTTTTTCTGTTTAG
Seq C2 exon
CTTTAAAGAAGAATAATATCACTAAATTTCCAAATGTTCACTCGAGGGTAAGGATTTCTTCTAGCACACCGGTGGTGGAGGATACACAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026851:ENSBTAT00000065141:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.536 A=NA C2=0.548
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]